Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
plastid_rRNA_geneUnrated
polypeptide_variation_siteUnrated sequence_variationsUnrated
circular ncRNAUnrated circular_ncRNAUnrated noncoding circRNAUnrated
intermediateUnrated
chimeric cDNA cloneUnrated chimeric_cDNA_cloneUnrated
scaRNAUnrated small Cajal body specific RNAUnrated small Cajal body-specific RNAUnrated
TR boxUnrated TR_boxUnrated
Jannovar:rare_amino_acid_variantUnrated rare amino acid variantUnrated rare_amino_acid_variantUnrated snpEff:RARE_AMINO_ACIDUnrated
RIT retrotransposonUnrated RTE LINE retrotransposonUnrated RTE_LINE_retrotransposonUnrated RTE retrotransposonUnrated
transcript translocationUnrated transcript_translocationUnrated
anti-codonUnrated anticodonUnrated
GC rich promoter regionUnrated GC_rich_promoter_regionUnrated GC-rich regionUnrated INSDC_qualifier:GC_rich_promoter_regionUnrated
cross genome matchUnrated cross_genome_matchUnrated
rescueUnrated
INSDC_qualifier:insulatorUnrated insulatorUnrated insulator elementUnrated
DTT transposonUnrated MarinerUnrated StowawayUnrated Tc1 Mariner TIR transposonUnrated Tc1_Mariner_TIR_transposonUnrated Tc1 transposonUnrated TcMar-Stowaway transposonUnrated
2-methylthio-N6-isopentenyladenosineUnrated ms2i6AUnrated two methylthio N6 isopentenyladenosineUnrated two_methylthio_N6_isopentenyladenosineUnrated
cDNAUnrated complementary DNAUnrated
initiation codonUnrated start codonUnrated start_codonUnrated
internal transcribed spacer regionUnrated internal_transcribed_spacer_regionUnrated
monocistronic primary transcriptUnrated monocistronic_primary_transcriptUnrated
C to G transversionUnrated C_to_G_transversionUnrated
RNApol III promoter type 2Unrated RNApol_III_promoter_type_2Unrated
modified residueUnrated mod_resUnrated post_translationally_modified_regionUnrated post_translational_modificationUnrated
cloned cDNA insertUnrated cloned_cDNA_insertUnrated
5 prime UTR intron variantUnrated 5_prime_UTR_intron_variantUnrated
catmat-4lUnrated catmat_left_handed_fourUnrated
CSL response elementUnrated CSL_response_elementUnrated
remarkUnrated
topologically defined regionUnrated topologically_defined_regionUnrated
nuclear geneUnrated nuclear_geneUnrated
INSDC_qualifier:pseudoUnrated pseudogenic rRNAUnrated pseudogenic_rRNAUnrated
CCA sequenceUnrated CCA tailUnrated CCA_tailUnrated
AsnUnrated asparagineUnrated NUnrated
conservative missense codonUnrated conservative missense variantUnrated conservative_missense_variantUnrated
zinc repressed elementUnrated zinc_repressed_elementUnrated
alternate_sequence_siteUnrated alternative_sequenceUnrated var_seqUnrated
high quality draftUnrated high_quality_draftUnrated
bidirectional promoterUnrated bidirectional_promoterUnrated
consensusUnrated
T loopUnrated T_loopUnrated TpsiC loopUnrated
CArG boxUnrated CArG_boxUnrated
translated nucleotide matchUnrated translated_nucleotide_matchUnrated
epigenomically modified regionUnrated epigenomically_modified_regionUnrated
immune_geneUnrated vertebrate_immune_system_geneUnrated
single nucleotide polymorphismUnrated SNPUnrated
vault_RNA_geneUnrated
polypeptide_conserved_motifUnrated
polypeptide fusionUnrated polypeptide_fusionUnrated
Z2_regionUnrated Z2-segmentUnrated
RprA RNAUnrated RprA_RNAUnrated
Gypsy LTR retrotransposonUnrated Gypsy_LTR_retrotransposonUnrated RLG retrotransposonUnrated Ty3 retrotransposonUnrated
T to A transversionUnrated T_to_A_transversionUnrated
phagemidUnrated
threose nucleic acidUnrated TNA oligoUnrated TNA_oligoUnrated
splice donor region variantUnrated splice_donor_region_variantUnrated
copy number lossUnrated copy_number_lossUnrated
V nonamerUnrated V_nonamerUnrated V-NONAMERUnrated
H ACA box snoRNA encodingUnrated H_ACA_box_snoRNA_encodingUnrated
calcineurin-dependent response elementUnrated CDRE motifUnrated CDRE_motifUnrated
early originUnrated early origin of replicationUnrated early_origin_of_replicationUnrated early replication originUnrated
gene cassette arrayUnrated gene_cassette_arrayUnrated
beta_turn_iirUnrated beta turn right handed type twoUnrated beta_turn_right_handed_type_twoUnrated type II beta turnUnrated type II turnUnrated
antisense primary transcriptUnrated antisense_primary_transcriptUnrated
unassigned supercontigUnrated unassigned_supercontigUnrated
arginyl tRNAUnrated arginyl_tRNAUnrated
nuclear sequenceUnrated nuclear_sequenceUnrated
vertebrate immunoglobulin T cell receptor rearranged segmentUnrated vertebrate_immunoglobulin_T_cell_receptor_rearranged_segmentUnrated
fixed variantUnrated fixed_variantUnrated
AspUnrated aspartic acidUnrated aspartic_acidUnrated DUnrated
subtelomereUnrated
sgRNAUnrated small guide RNAUnrated
INSDC_qualifier:RNase_MRP_RNAUnrated RNase MRP RNAUnrated RNase_MRP_RNAUnrated
exon lossUnrated exon_loss_variantUnrated Jannovar:exon_loss_variantUnrated skipped exonUnrated snpEff:EXON_DELETEDUnrated
small nuclear RNA U12Unrated snRNA U12Unrated U12 small nuclear RNAUnrated U12 snRNAUnrated U12_snRNAUnrated
polypeptide domainUnrated polypeptide_domainUnrated polypeptide_structural_domainUnrated
fragment assemblyUnrated fragment_assemblyUnrated physical mapUnrated
alanine tRNA primary transcriptUnrated alanine_tRNA_primary_transcriptUnrated
ModAsnUnrated modified L asparagineUnrated modified L-asparagineUnrated modified_L_asparagineUnrated
upstream AUG codonUnrated upstream_AUG_codonUnrated
flanking three prime quadruplet recoding signalUnrated flanking_three_prime_quadruplet_recoding_signalUnrated
candidate geneUnrated candidate_geneUnrated target geneUnrated
polyA clusterUnrated polyA_clusterUnrated polyA site clusterUnrated polyA_site_clusterUnrated
sbRNAUnrated stem_bulge_RNAUnrated Stem-bulge RNAUnrated
DNA primerUnrated primerUnrated primer oligonucleotideUnrated primer polynucleotideUnrated primer sequenceUnrated
minus 12 signalUnrated minus_12_signalUnrated
INSDC_qualifier:siRNAUnrated siRNAUnrated small interfering RNAUnrated
centromere outer repeat transcriptUnrated regional centromere outer repeat region transcriptUnrated regional_centromere_outer_repeat_region_transcriptUnrated regional_centromere_outer_repeat_transcriptUnrated
polypeptide truncationUnrated polypeptide_truncationUnrated protein truncationUnrated
PUnrated ProUnrated prolineUnrated
endogenous retroviral sequenceUnrated endogenous_retroviral_sequenceUnrated
3-(3-amino-3-carboxypropyl)uridineUnrated acp3UUnrated three_three_amino_three_carboxypropyl_uridineUnrated
5' coding exonUnrated five prime coding exonUnrated five_prime_coding_exonUnrated
5-(isopentenylaminomethyl)- 2'-O-methyluridineUnrated five isopentenylaminomethyl two prime O methyluridineUnrated five_isopentenylaminomethyl_two_prime_O_methyluridineUnrated inm5UmUnrated
H3K23acUnrated H3K23 acetylation siteUnrated H3K23_acetylation_siteUnrated
intronic splice enhancerUnrated intronic_splice_enhancerUnrated
sarcin like RNA motifUnrated sarcin_like_RNA_motifUnrated sarcin/ricin domainUnrated sarcin/ricin loopUnrated sarcin/ricin RNA domainUnrated
indel artifactUnrated indel_artifactUnrated
(A(U)GUA) motifUnrated Nrd1 binding motifUnrated Nrd1-dependent terminatorUnrated polyA site associated transcription termination signalUnrated polyA site downstream elementUnrated transcription termination signalUnrated transcription_termination_signalUnrated UCUUG motifUnrated UGUAA/G motifUnrated
extramembrane polypeptide regionUnrated extramembrane_polypeptide_regionUnrated

Next 100 concepts