Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
pheromone response elementUnrated pheromone_response_elementUnrated PREUnrated
mating type region motifUnrated mating_type_region_motifUnrated
inversion derived duplication plus aneuploidUnrated inversion_derived_duplication_plus_aneuploidUnrated
plasmid locationUnrated plasmid_locationUnrated
chromosome breakage sequenceUnrated chromosome_breakage_sequenceUnrated
trans splice donor siteUnrated trans-splice donor siteUnrated trans_splice_donor_siteUnrated
TyrUnrated tyrosineUnrated YUnrated
i6AUnrated N6 isopentenyladenosineUnrated N6-isopentenyladenosineUnrated N6_isopentenyladenosineUnrated
mitochondrial rRNA geneUnrated mt_rRNA_geneUnrated
gene structure variantUnrated gene_variantUnrated Jannovar:gene_variantUnrated snpEff:GENEUnrated VAAST:gene_variantUnrated
SL6 acceptor siteUnrated SL6_acceptor_siteUnrated
branch pointUnrated branch_pointUnrated branch siteUnrated branch_siteUnrated
quality_valueUnrated
INSDC_feature:mobile_elementUnrated MGEUnrated mobile genetic elementUnrated mobile_genetic_elementUnrated
RST matchUnrated RST_matchUnrated
INSDC_qualifier:pseudoUnrated INSDC_qualifier:unknownUnrated pseudogeneUnrated
constitutive promoterUnrated constitutive_promoterUnrated
small nuclear RNA U7Unrated snRNA U7Unrated U7 small nuclear RNAUnrated U7 snRNAUnrated U7_snRNAUnrated
deficient translocationUnrated deficient_translocationUnrated
2'-O-ribosyladenosine (phosphate)Unrated Ar(p)Unrated two prime O ribosyladenosine phosphateUnrated two_prime_O_ribosyladenosine_phosphateUnrated
ACSUnrated ARS consensus sequenceUnrated ARS_consensus_sequenceUnrated
interior intronUnrated interior_intronUnrated
35S rRNA primary transcriptUnrated rRNA large subunit primary transcriptUnrated rRNA_large_subunit_primary_transcriptUnrated
MCBUnrated MluI cell cycle boxUnrated
gene silenced by DNA methylationUnrated gene_silenced_by_DNA_methylationUnrated methylation-silenced geneUnrated
microarray oligoUnrated microarray_oligoUnrated microarray oligonucleotideUnrated
miR encoding vaultRNA primary transcriptUnrated miR_encoding_vaultRNA_primary_transcriptUnrated
5KB downstream variantUnrated 5KB_downstream_variantUnrated downstreamUnrated Seattleseq:downstream-geneUnrated
overlappingUnrated
mRNA readUnrated mRNA_readUnrated
ArgUnrated arginineUnrated RUnrated
H3K18acUnrated H3K18 acetylation siteUnrated H3K18_acetylation_siteUnrated
BAC endUnrated BAC_endUnrated BAC end sequenceUnrated BESUnrated
common variantUnrated common_variantUnrated
polypyrimidine tractUnrated polypyrimidine_tractUnrated
epitopeUnrated
VDJ J clusterUnrated VDJ_J_clusterUnrated (VDJ)-J-CLUSTERUnrated
ac4CUnrated N4 acetylcytidineUnrated N4-acetylcytidineUnrated N4_acetylcytidineUnrated
linear plasmidUnrated linear_plasmidUnrated
single_strand_restriction_enzyme_cleavage_siteUnrated
I LINE retrotransposonUnrated I_LINE_retrotransposonUnrated LINE I elementUnrated RII retrotransposonUnrated
five prime flanking regionUnrated five_prime_flanking_regionUnrated
gene to gene featureUnrated gene_to_gene_featureUnrated
BACmapUnrated fingerprint mapUnrated fingerprint_mapUnrated FPCUnrated FPCmapUnrated restriction mapUnrated
enhancer_binding_siteUnrated
UNAAAC motifUnrated UNAAAC_motifUnrated
m2,2,7GUnrated N2,N2,7-trimethylguanosineUnrated N2_N2_7_trimethylguanosineUnrated
IDP (GATA)Unrated iron repressed GATA elementUnrated iron_repressed_GATA_elementUnrated
homo compound chromosomeUnrated homo-compound chromosomeUnrated homo_compound_chromosomeUnrated
mathematically defined repeatUnrated mathematically_defined_repeatUnrated
TCS elementUnrated TCS_elementUnrated TEA Consensus Sequence Unrated
5-formylcytidineUnrated f5CUnrated five formylcytidineUnrated five_formylcytidineUnrated
DUnrated dihydrouridineUnrated
maxicircleUnrated maxicircle_chromosomeUnrated
modified L lysineUnrated modified L-lysineUnrated modified_L_lysineUnrated ModLysUnrated
CDS regionUnrated CDS_regionUnrated
boundaryUnrated breakpointUnrated junctionUnrated
3'-clipUnrated three prime clipUnrated three_prime_clipUnrated
V VJ clusterUnrated V_VJ_clusterUnrated V-(VJ)-CLUSTERUnrated
match partUnrated match_partUnrated
motif ten elementUnrated motif_ten_elementUnrated MTEUnrated
inverted tandem duplicationUnrated inverted_tandem_duplicationUnrated
2-methylthio-N6-(cis-hydroxyisopentenyl) adenosineUnrated ms2io6AUnrated two methylthio N6 cis hydroxyisopentenyl adenosineUnrated two_methylthio_N6_cis_hydroxyisopentenyl_adenosineUnrated
synthetic sequenceUnrated synthetic_sequenceUnrated
INSDC_note:transcription_start_siteUnrated transcription start siteUnrated transcription_start_siteUnrated TSSUnrated
scRNA primary transcriptUnrated scRNA_primary_transcriptUnrated scRNA transcriptUnrated small cytoplasmic RNA transcriptUnrated
reciprocal chromosomal translocationUnrated reciprocal_chromosomal_translocationUnrated
H3K36acUnrated H3K36 acetylation siteUnrated H3K36_acetylation_siteUnrated
conservative amino acid substitutionUnrated conservative_amino_acid_substitutionUnrated
inducible promoterUnrated inducible_promoterUnrated
pericentricUnrated
decreased transcriptionUnrated decreased transcript levelUnrated decreased transcript level variantUnrated decreased_transcript_level_variantUnrated
Bruno response elementUnrated Bruno_response_elementUnrated
possible assembly errorUnrated possible_assembly_errorUnrated
5 prime UTR elongationUnrated 5_prime_UTR_elongationUnrated
non_terUnrated non terminalUnrated non_terminal_residueUnrated
3-methylcytidineUnrated m3CUnrated three methylcytidineUnrated three_methylcytidineUnrated
3' TIRUnrated three prime terminal inverted repeatUnrated three_prime_terminal_inverted_repeatUnrated
frameshifted mRNAUnrated mRNA with frameshiftUnrated mRNA_with_frameshiftUnrated
aberrant processed transcriptUnrated aberrant_processed_transcriptUnrated
engineered geneUnrated engineered_geneUnrated
C geneUnrated C_GENEUnrated C_gene_segmentUnrated constant geneUnrated INSDC_feature:C_regionUnrated
inversion derived bipartite deficiencyUnrated inversion_derived_bipartite_deficiencyUnrated
unique variantUnrated unique_variantUnrated
NESUnrated nuclear export signalUnrated nuclear_export_signalUnrated
dinucleotide repeat microsatelliteUnrated dinucleotide repeat microsatellite featureUnrated dinucleotide_repeat_microsatellite_featureUnrated dinucleotide repeat microsatellite locusUnrated dinucleotide repeat microsatellite markerUnrated
mating type region replication fork barrierUnrated mating_type_region_replication_fork_barrierUnrated
sequence rearrangement featureUnrated sequence_rearrangement_featureUnrated
contigUnrated
probeUnrated
DTH transposonUnrated Harbinger transposonUnrated PIF Harbinger TIR transposonUnrated PIF_Harbinger_TIR_transposonUnrated PIF transposonUnrated Tourist transposon elementUnrated
fusionUnrated
supported by sequence similarityUnrated supported_by_sequence_similarityUnrated
assortment derived aneuploidUnrated assortment_derived_aneuploidUnrated
INSDC_qualifier:terminatorUnrated terminatorUnrated terminator sequenceUnrated
4bp start codonUnrated four bp start codonUnrated four_bp_start_codonUnrated
Pho7 binding siteUnrated Pho7_binding_siteUnrated
mitochondrial small subunit rRNA geneUnrated mt_SSU_rRNA_geneUnrated
5-taurinomethyluridineUnrated five taurinomethyluridineUnrated five_taurinomethyluridineUnrated tm5UUnrated
feature truncationUnrated feature_truncationUnrated Jannovar:feature_truncationUnrated VEP:feature_truncationUnrated

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