Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
V D DJ J clusterUnrated V_D_DJ_J_clusterUnrated V-D-(DJ)-J-CLUSTERUnrated
transcriptionally regulatedUnrated transcriptionally_regulatedUnrated
anchor regionUnrated anchor_regionUnrated
7-methylguanosineUnrated m7GUnrated seven methylguanosineUnrated seven_methylguanosineUnrated
nest_motifUnrated polypeptide_nest_motifUnrated
nuclease sensitive siteUnrated nuclease_sensitive_siteUnrated
scoreUnrated
hyperploidUnrated
telomeric D loopUnrated telomeric_D_loopUnrated
T7 RNA Polymerase PromoterUnrated T7_RNA_Polymerase_PromoterUnrated
null mutationUnrated null_mutationUnrated
ANNOVAR:ncRNA_UTR5Unrated incomplete transcript 5UTR variantUnrated incomplete_transcript_5UTR_variantUnrated
expressed sequence matchUnrated expressed_sequence_matchUnrated
serine threonine staple motifUnrated serine_threonine_staple_motifUnrated st_stapleUnrated
redundant inserted stop gainedUnrated redundant_inserted_stop_gainedUnrated
protease siteUnrated protease_siteUnrated
regulatory_promoter_elementUnrated
sterol_regulatory_elementUnrated
V J clusterUnrated V_J_clusterUnrated V-J-CLUSTERUnrated
small nuclear RNA U11Unrated snRNA U11Unrated U11 small nuclear RNAUnrated U11 snRNAUnrated U11_snRNAUnrated
scaRNA geneUnrated scaRNA_geneUnrated Small Cajal body-specific RNA geneUnrated
directUnrated
absent polypeptideUnrated absent proteinUnrated lost polypeptideUnrated lost_polypeptideUnrated lost proteinUnrated
INSDC_feature:S_regionUnrated S regionUnrated S_regionUnrated
glutamine tRNA primary transcriptUnrated glutamine_tRNA_primary_transcriptUnrated
pre-tRNA intronUnrated tRNA intronUnrated tRNA_intronUnrated
CACTA TIR transposonUnrated CACTA_TIR_transposonUnrated CACTA transposon elementUnrated CACTC transposonUnrated CMC-EnSpm transposonUnrated dSpm transposonUnrated DTC transposonUnrated En-Spm transposonUnrated EnSpm transposonUnrated En transposonUnrated Spm transposonUnrated
Okazaki fragmentUnrated Okazaki_fragmentUnrated
regional centromere outer repeat regionUnrated regional_centromere_outer_repeat_regionUnrated
Atf1/Pcr1 recognition motifUnrated ATF/CRE siteUnrated CREUnrated cyclic AMP response elementUnrated M26 binding siteUnrated M26_binding_siteUnrated m26 siteUnrated
SRP RNA geneUnrated SRP_RNA_geneUnrated
KUnrated LysUnrated lysineUnrated
homol E boxUnrated homol_E_boxUnrated
A_box_type_2Unrated
exon junctionUnrated exon_junctionUnrated
SL37 acceptor siteUnrated SL7_acceptor_siteUnrated
somatic variantUnrated somatic_variantUnrated
class I RNAUnrated class_I_RNAUnrated
polymorphic_pseudogeneUnrated polymorphic psuedogeneUnrated
3 prime UTR intron variantUnrated 3_prime_UTR_intron_variantUnrated
small nucleolar RNA U14 gene, snoRNA U14 gene, U14 small nucleolar RNA gene, U14 snoRNA geneUnrated U14_snoRNA_geneUnrated
gene fragmentUnrated gene_fragmentUnrated
tasiRNAUnrated
interchromosomal transpositionUnrated interchromosomal_transpositionUnrated
protein protein contactUnrated protein_protein_contactUnrated protein protein contact siteUnrated
modified L leucineUnrated modified L-leucine Unrated modified_L_leucineUnrated ModLeuUnrated
splice siteUnrated splice_siteUnrated
transcript regionUnrated transcript_regionUnrated
amber_stop_codonUnrated Amber stop codonUnrated
complex chromosomal mutationUnrated complex_chromosomal_mutationUnrated complex_structural_alterationUnrated
T_cell_receptor_D_geneUnrated TR_D_GeneUnrated
initiatior codon variantUnrated initiator codon changeUnrated initiator_codon_variantUnrated Jannovar:initiator_codon_variantUnrated VAT:startOverlapUnrated
bound by proteinUnrated bound_by_proteinUnrated
elongated out of frame N terminalUnrated elongated_out_of_frame_polypeptide_N_terminalUnrated
trans-splicedUnrated trans_splicedUnrated
transcriptUnrated
inversion siteUnrated inversion_siteUnrated
five_prime_USTUnrated
major transcription start siteUnrated major TSSUnrated major_TSSUnrated
C/D box snoRNA primary transcriptUnrated C_D_box_snoRNA_primary_transcriptUnrated
mobile element insertionUnrated mobile_element_insertionUnrated
polypeptide gain of function variantUnrated polypeptide_gain_of_function_variantUnrated
SL10 acceptor siteUnrated SL10_acceptor_siteUnrated
Jannovar:splicing_variantUnrated splicing variantUnrated splicing_variantUnrated
ring chromosomeUnrated ring_chromosomeUnrated
sequence collectionUnrated sequence_collectionUnrated
sense overlap lncRNA geneUnrated sense_overlap_lncRNA_geneUnrated sense overlap ncRNA geneUnrated
editing blockUnrated editing_blockUnrated
ribonuclease siteUnrated ribonuclease_siteUnrated
regulatory region ablationUnrated regulatory_region_ablationUnrated VEP:regulatory_region_ablationUnrated
incomplete transcript variantUnrated incomplete_transcript_variantUnrated
polypeptide post translational processing variantUnrated polypeptide_post_translational_processing_variantUnrated
DNA binding siteUnrated DNA_binding_siteUnrated
INSDC_qualifier:invertedUnrated inverted repeatUnrated inverted_repeatUnrated inverted repeat sequenceUnrated
H_ACA_box_scaRNAUnrated H/ACA scaRNAUnrated
translocation attributeUnrated translocaton_attributeUnrated
CAGE clusterUnrated CAGE_clusterUnrated CAGE peakUnrated CAGE_peakUnrated INSDC_note:CAGE_clusterUnrated
plus 1 ribosomal frameshiftUnrated plus 1 translational frameshiftUnrated plus_1_translational_frameshiftUnrated
compositionally_biased_regionUnrated compositionally_biased_region_of_peptideUnrated
Jannovar:transcript_variantUnrated snpEff:TRANSCRIPTUnrated transcript variantUnrated transcript_variantUnrated VAAST:transcript_variantUnrated
untranslated region polycistronic mRNAUnrated untranslated_region_polycistronic_mRNAUnrated
GcvB RNAUnrated GcvB_RNAUnrated
pyrimidine to purine transversionUnrated pyrimidine_to_purine_transversionUnrated
blocked reading frameUnrated blocked_reading_frameUnrated
exemplar mRNAUnrated exemplar_mRNAUnrated
INSDC_qualifier:otherUnrated regulatory regionUnrated regulatory_regionUnrated
coding_transcript_with_retained_intronUnrated
active site residueUnrated catalytic residueUnrated catalytic_residueUnrated
known_ncrnaUnrated ncRNAUnrated noncoding RNAUnrated
INSDC_feature:mRNAUnrated messenger RNAUnrated mRNAUnrated protein_coding_transcriptUnrated
INSDC_qualifier:rasiRNAUnrated rasiRNAUnrated repeat associated small interfering RNAUnrated
cytosolic 23S LSU rRNAUnrated cytosolic 23S rRNAUnrated cytosolic_23S_rRNAUnrated cytosolic rRNA 23SUnrated
inactive ligand binding siteUnrated inactive_ligand_binding_siteUnrated
nuclease hypersensitive siteUnrated nuclease_hypersensitive_siteUnrated
lysosomal localization signalUnrated lysosomal_localization_signalUnrated
biosynthetic_gene_clusterUnrated Metabolic gene clusterUnrated
transcriptional initiation clusterUnrated transcriptional start site clusterUnrated transcription_start_clusterUnrated TSCUnrated TSS clusterUnrated
three prime stem loop structureUnrated three_prime_stem_loop_structureUnrated
H4K20 mono-methylation siteUnrated H4K20_monomethylation_siteUnrated
CNPUnrated CNVUnrated copy number polymorphismUnrated copy number variationUnrated copy_number_variationUnrated

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