Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
H3R2me1Unrated H3R2 monomethylation siteUnrated H3R2_monomethylation_siteUnrated
large intervening non-coding RNAUnrated lincRNAUnrated long intergenic non-coding RNAUnrated long intervening non-coding RNAUnrated
LUnrated LeuUnrated leucineUnrated
coding startUnrated coding_startUnrated translation initiation siteUnrated
polymerase II promoterUnrated RNApol II promoterUnrated RNApol_II_promoterUnrated RNA polymerase B promoterUnrated
engineered rescue fragmentUnrated engineered rescue regionUnrated engineered_rescue_regionUnrated engineered rescue segmentUnrated
retrotransposedUnrated
DRE motifUnrated DRE_motifUnrated NDM4Unrated WATCGATW_motifUnrated
clone endUnrated clone_endUnrated
five prime recoding siteUnrated five_prime_recoding_siteUnrated
cmo5UUnrated uridine 5-oxyacetic acidUnrated uridine five oxyacetic acidUnrated uridine_five_oxyacetic_acidUnrated
site specific recombination target regionUnrated site_specific_recombination_target_regionUnrated
spliceosomal intronUnrated spliceosomal_intronUnrated
intein containingUnrated intein_containingUnrated
transposable element insertion siteUnrated transposable_element_insertion_siteUnrated
internal feature elongationUnrated internal_feature_elongationUnrated Jannovar:internal_feature_elongationUnrated
canonical 5' splice siteUnrated canonical five prime splice siteUnrated canonical_five_prime_splice_siteUnrated
edited CDSUnrated edited_CDSUnrated
28S rRNA geneUnrated 28S_rRNA_geneUnrated cytosolic_rRNA_28S_geneUnrated
recombination hotspotUnrated recombination_hotspotUnrated
glutamyl-transfer ribonucleic acidUnrated glutamyl tRNAUnrated glutamyl_tRNAUnrated
polypeptide motifUnrated polypeptide_motifUnrated
DTR transposonUnrated Transib TIR transposonUnrated Transib_TIR_transposonUnrated transib transposonUnrated
FUnrated PheUnrated phenylalanineUnrated
GAGAUnrated GAGA motifUnrated GAGA_motifUnrated NDM1Unrated
sequence_motifUnrated
endosomal localization signalUnrated endosomal_localization_signalUnrated
All_IG_genesUnrated IG_genesUnrated immunoglobulin_geneUnrated
modified_guanineUnrated
m2GUnrated N2 methylguanosineUnrated N2-methylguanosineUnrated N2_methylguanosineUnrated
inversion derived aneuploid chromosomeUnrated inversion_derived_aneuploid_chromosomeUnrated
SRP RNA encodingUnrated SRP_RNA_encodingUnrated
rRNA cleavage RNAUnrated rRNA_cleavage_RNAUnrated
incomplete terminal codon variantUnrated incomplete_terminal_codon_variantUnrated partial_codonUnrated VEP:incomplete_terminal_codon_variantUnrated
translocation elementUnrated translocation_elementUnrated
2-methylthio-N6-methyladenosineUnrated ms2m6AUnrated two methylthio N6 methyladenosineUnrated two_methylthio_N6_methyladenosineUnrated
incomplete transcript exonic variantUnrated incomplete_transcript_exonic_variantUnrated
minus_24_signalUnrated
ANNOVAR:frameshift deletionUnrated frameshift truncationUnrated frameshift_truncationUnrated Jannovar:frameshift_truncationUnrated
conservative inframe deletionUnrated conservative_inframe_deletionUnrated
5' duplicated transcriptUnrated five prime duplicated transcriptUnrated five_prime_duplicated_transcriptUnrated five prime partially duplicated transcriptUnrated
RNA sequence secondary structureUnrated RNA_sequence_secondary_structureUnrated
3'D-SPACERUnrated three prime D spacerUnrated three_prime_D_spacerUnrated
complex operonUnrated complex_operonUnrated
polintonUnrated
endogenous retroviral geneUnrated endogenous_retroviral_geneUnrated
LARDUnrated large_retrotransposon_derivativeUnrated Large Retrotransposon DerivativeUnrated
post translationally regulatedUnrated post-translationally regulatedUnrated post_translationally_regulatedUnrated
internal Shine Dalgarno sequenceUnrated internal Shine-Dalgarno sequenceUnrated internal_Shine_Dalgarno_sequenceUnrated
internal eliminated sequenceUnrated internal_eliminated_sequenceUnrated
inverted insertional duplicationUnrated inverted_insertional_duplicationUnrated
conformational change variantUnrated conformational_change_variantUnrated
three prime coding exon noncoding regionUnrated three_prime_coding_exon_noncoding_regionUnrated three_prime_exon_noncoding_regionUnrated
transmembrane polypeptide regionUnrated transmembrane_polypeptide_regionUnrated
centromeric repeatUnrated centromeric_repeatUnrated INSDC_qualifier:centromeric_repeatUnrated
AP-1 binding siteUnrated AP_1_binding_siteUnrated
kozak consensusUnrated kozak consensus sequenceUnrated kozak sequenceUnrated kozak_sequenceUnrated
cleaved peptide regionUnrated cleaved_peptide_regionUnrated
regionUnrated sequenceUnrated
linear single stranded DNA chromosomeUnrated linear_single_stranded_DNA_chromosomeUnrated
genomically contaminated cDNA cloneUnrated genomically_contaminated_cDNA_cloneUnrated
consensus AFLP fragmentUnrated consensus_AFLP_fragmentUnrated consensus amplified fragment length polymorphism fragmentUnrated
genomically imprintedUnrated genomically_imprintedUnrated
monocistronic transcriptUnrated monocistronic_transcriptUnrated
H3K27 di-methylation siteUnrated H3K27_dimethylation_siteUnrated
glutamic acid tRNA primary transcriptUnrated glutamic_acid_tRNA_primary_transcriptUnrated
pseudochromosomeUnrated ultracontigUnrated
regional centromereUnrated regional_centromereUnrated
INSDC_feature:V_regionUnrated V regionUnrated V_regionUnrated
mitochondrial DNA readUnrated mitochondrial_DNA_readUnrated
double stranded DNA chromosomeUnrated double_stranded_DNA_chromosomeUnrated
gene with mRNA with frameshiftUnrated gene_with_mRNA_with_frameshiftUnrated
rearranged at DNA levelUnrated rearranged_at_DNA_levelUnrated
autopolyploidUnrated
VJ C clusterUnrated VJ_C_clusterUnrated
gene with dicistronic mRNAUnrated gene_with_dicistronic_mRNAUnrated gene with dicistronic processed transcriptUnrated
abolished transcriptionUnrated abolished transcription levelUnrated abolished transcription level variantUnrated abolished_transcription_level_variantUnrated
golden path fragmentUnrated golden_path_fragmentUnrated
3'D-RSUnrated three prime D recombination signal sequenceUnrated three_prime_D-recombination_signal_sequenceUnrated three_prime_D_recombination_signal_sequenceUnrated
frameshift_Unrated frameshift_codingUnrated frameshift variantUnrated frameshift_variantUnrated Jannovar:frameshift_variantUnrated Seattleseq:frameshiftUnrated snpEff:FRAME_SHIFTUnrated VAAST:frameshift_variantUnrated VEP:frameshift_variantUnrated
ESSUnrated exonic splicing silencerUnrated exonic_splicing_silencerUnrated
H2BK5acUnrated H2BK5 acetylation siteUnrated H2BK5_acetylation_siteUnrated
minicircle geneUnrated minicircle_geneUnrated
canonical base pairUnrated Watson Crick base pairUnrated Watson-Crick pairUnrated WC base pairUnrated WC_base_pairUnrated
double stranded RNA virus sequenceUnrated ds RNA viral sequenceUnrated ds_RNA_viral_sequenceUnrated
galactosyl queuosineUnrated galactosyl-queuosineUnrated galactosyl_queuosineUnrated galQUnrated
snpEff:SYNONYMOUS_STARTUnrated start_retained_variantUnrated
pseudoknotUnrated
i motifUnrated i_motifUnrated short intercalated motifUnrated
foldback elementUnrated foldback_elementUnrated
intrachromosomal mutationUnrated intrachromosomal_mutationUnrated
short tandem repeat changeUnrated short_tandem_repeat_changeUnrated str changeUnrated
NMD escaping variantUnrated NMD_escaping_variantUnrated nonsense-mediated decay escaping variantUnrated
NDM3Unrated NDM3 motifUnrated NDM3_motifUnrated non directional motif 3Unrated
Y_RNA_geneUnrated
nuclear chromosomeUnrated nuclear_chromosomeUnrated
C_D_box_scaRNAUnrated C/D scaRNAUnrated
coding sequence intron variantUnrated coding_transcript_intron_variantUnrated Jannovar:coding_transcript_intron_variantUnrated
3'D-NOMAMERUnrated three prime D nonamerUnrated three_prime_D_nonamerUnrated
incomplete transcript splice region variantUnrated incomplete_transcript_splice_region_variantUnrated

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