Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
Retrovirus LTR retrotransposonUnrated Retrovirus_LTR_retrotransposonUnrated RLR retrotransposonUnrated
topology attributeUnrated topology_attributeUnrated
regulatory region amplificationUnrated regulatory_region_amplificationUnrated VEP:regulatory_region_amplificationUnrated
simple sequence length variationUnrated simple_sequence_length_variationUnrated
targeting_vectorUnrated
unorientated interchromosomal transpositionUnrated unoriented_interchromosomal_transpositionUnrated
DTE transposonUnrated Merlin TIR transposonUnrated Merlin_TIR_transposonUnrated Merlin transposonUnrated
unigene_clusterUnrated
cryptic prophageUnrated cryptic_prophageUnrated
asx_turn_irUnrated asx_turn_right_handed_type_oneUnrated asx turn type right handed type oneUnrated
TNAUnrated
small nuclear RNA U4atacUnrated snRNA U4atacUnrated U4atac small nuclear RNAUnrated U4atac snRNAUnrated U4atac_snRNAUnrated
included intronUnrated intron gainUnrated intron gain variantUnrated intron_gain_variantUnrated retained intronUnrated
INSDC_feature:precursor_RNAUnrated precursor RNAUnrated precursor_RNAUnrated
zinc_fingUnrated zinc finger binding siteUnrated zinc_finger_binding_siteUnrated
miRNA target siteUnrated miRNA_target_siteUnrated
H3K27acUnrated H3K27 acetylation siteUnrated H3K27_acetylation_siteUnrated
insertion or deletionUnrated unspecified indelUnrated unspecified_indelUnrated
INSDC_note:nucleotide_cleavage_siteUnrated nucleotide cleavage siteUnrated nucleotide_cleavage_siteUnrated
nuclease binding siteUnrated nuclease_binding_siteUnrated
gapUnrated INSDC_feature:gapUnrated
core prokaryotic promoter elementUnrated core_prokaryotic_promoter_elementUnrated
sbRNA_geneUnrated stem_bulge_RNA_geneUnrated Stem-bulge RNA geneUnrated
incomplete transcript intronic variantUnrated incomplete_transcript_intronic_variantUnrated
epigenetically_modified_regionUnrated
dicistronicUnrated
5 prime UTR truncationUnrated 5_prime_UTR_truncationUnrated Jannovar:5_prime_utr_truncationUnrated snpEff:UTR_5_DELETEDUnrated
plasmid geneUnrated plasmid_geneUnrated
extended intronic splice region variantUnrated extended_intronic_splice_region_variantUnrated
H3K20 trimethylation siteUnrated H3K20_trimethylation_siteUnrated
unidirectional_intergenic_fusionUnrated
CDS independently knownUnrated CDS_independently_knownUnrated
5-methoxyuridineUnrated five methoxyuridineUnrated five_methoxyuridineUnrated mo5UUnrated
m6AmUnrated N6,2'-O-dimethyladenosineUnrated N6 2 prime O dimethyladenosineUnrated N6_2_prime_O_dimethyladenosineUnrated
variant qualityUnrated variant_qualityUnrated
modified_adenineUnrated
encodes overlapping polypeptides different start and stopUnrated encodes_overlapping_polypeptides_different_start_and_stopUnrated
arginine tRNA primary transcriptUnrated arginine_tRNA_primary_transcriptUnrated
mitochondrial DNAUnrated mitochondrial_DNAUnrated mtDNAUnrated
V VJ C clusterUnrated V_VJ_C_clusterUnrated V-(VJ)-C-CLUSTERUnrated
H4K16acUnrated H4K16 acetylation siteUnrated H4K16_acetylation_siteUnrated
micro RNA primary transcriptUnrated miRNA primary transcriptUnrated miRNA_primary_transcriptUnrated small temporal RNA primary transcriptUnrated stRNA primary transcriptUnrated stRNA_primary_transcriptUnrated
nucleomorph geneUnrated nucleomorph_geneUnrated
paracentric inversionUnrated paracentric_inversionUnrated
tyrosyl-transfer ribonucleic acidUnrated tyrosyl tRNAUnrated tyrosyl_tRNAUnrated
regulonUnrated
alteration attributeUnrated alteration_attributeUnrated
minus 1 ribosomal frameshiftUnrated minus 1 ribosomal slippageUnrated minus 1 translational frameshiftUnrated minus_1_translational_frameshiftUnrated
encodes overlapping peptides different startUnrated encodes_overlapping_peptides_different_startUnrated
compound chromosomeUnrated compound_chromosomeUnrated
ANNOVAR:nonframeshift insertionUnrated inframe_codon_gainUnrated inframe increase in CDS lengthUnrated inframe insertionUnrated inframe_insertionUnrated Jannovar:inframe_insertionUnrated snpEFF:CODON_INSERTIONUnrated VAT:insertionNFSUnrated VEP:inframe_insertionUnrated
PCBUnrated
sequence assemblyUnrated sequence_assemblyUnrated
gene arrayUnrated gene_arrayUnrated
mitochondrial contigUnrated mitochondrial_contigUnrated
INSDC_qualifier:x_element_combinatorial_repeatUnrated X element combinatorial repeatUnrated X_element_combinatorial_repeatUnrated
small nuclear RNA U6Unrated snRNA U6Unrated U6 small nuclear RNAUnrated U6 snRNAUnrated U6_snRNAUnrated
spurious proteinUnrated spurious_proteinUnrated
cloneUnrated
pericentric inversionUnrated pericentric_inversionUnrated
cryptic splice siteUnrated cryptic splice site activationUnrated cryptic_splice_site_variantUnrated
inside intronUnrated inside_intronUnrated
5 prime UTR premature start codon gain variantUnrated 5_prime_UTR_premature_start_codon_gain_variantUnrated Jannovar:5_prime_UTR_premature_start_codon_gain_variantUnrated snpEff:START_GAINEDUnrated
non transcribed regionUnrated non_transcribed_regionUnrated nontranscribed regionUnrated non-transcribed sequenceUnrated nontranscribed sequenceUnrated
ligand binding siteUnrated ligand_binding_siteUnrated
pre edited regionUnrated pre-edited regionUnrated pre_edited_regionUnrated
stRNA encodingUnrated stRNA_encodingUnrated
CDS predictedUnrated CDS_predictedUnrated
cytosolic 25S LSU rRNAUnrated cytosolic 25S ribosomal RNAUnrated cytosolic 25S rRNAUnrated cytosolic_25S_rRNAUnrated cytosolic rRNA 25SUnrated
supported by domain matchUnrated supported_by_domain_matchUnrated
Phage RNA Polymerase PromoterUnrated Phage_RNA_Polymerase_PromoterUnrated
proline tRNA primary transcriptUnrated proline_tRNA_primary_transcriptUnrated
homing endonuclease binding siteUnrated homing_endonuclease_binding_siteUnrated
interchromosomal_translocationUnrated
left handed helixUnrated left_handed_peptide_helixUnrated
restriction_enzyme_single_strand_overhangUnrated single strand overhangUnrated
Jannovar:structural_variantUnrated structural_variantUnrated VAT:svOverlapUnrated
rare variantUnrated rare_variantUnrated
fragmentUnrated fragmentaryUnrated
INSDC_qualifier:trans_splicingUnrated trans spliced transcriptUnrated trans-spliced transcriptUnrated trans_spliced_transcriptUnrated
databank entryUnrated databank_entryUnrated
compound chromosome armUnrated compound_chromosome_armUnrated
kink turnUnrated kink-turn motifUnrated K-turnUnrated K turn RNA motifUnrated K_turn_RNA_motifUnrated
N6 threonylcarbamoyladenosineUnrated N6-threonylcarbamoyladenosineUnrated N6_threonylcarbamoyladenosineUnrated t6AUnrated
intronic splicing silencerUnrated intronic_splicing_silencerUnrated ISSUnrated
non conservative missense codonUnrated non conservative missense variantUnrated non_conservative_missense_variantUnrated
Crypton transposonUnrated Crypton YR transposonUnrated Crypton_YR_transposonUnrated DYC transposonUnrated
V VDJ J C clusterUnrated V_VDJ_J_C_clusterUnrated V-(VDJ)-J-C-CLUSTERUnrated
genotypeUnrated
cis-acting homologous chromosome pairing regionUnrated cis_acting_homologous_chromosome_pairing_regionUnrated
free duplicationUnrated free_duplicationUnrated
tnaORFUnrated translated nested antisense geneUnrated
V D DJ clusterUnrated V_D_DJ_clusterUnrated V-D-(DJ)-CLUSTERUnrated
interferon stimulated response elementUnrated ISREUnrated
ARIAUnrated
transcription unitUnrated transcription_unitUnrated
vertebrate_immunoglobulin/T-cell receptor geneUnrated vertebrate immunoglobulin T cell receptor segmentUnrated vertebrate_immunoglobulin_T_cell_receptor_segmentUnrated
INSDC_qualifier:response_elementUnrated response elementUnrated response_elementUnrated
five prime-five prime overlapUnrated five_prime_five_prime_overlapUnrated
UGA stop codon signalUnrated UGA_stop_codon_signalUnrated

Next 100 concepts