Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
H2AK5acUnrated H2AK5 acetylation siteUnrated H2AK5_acetylation_siteUnrated
transposon fragmentUnrated transposon_fragmentUnrated
gene rearranged at DNA levelUnrated gene_rearranged_at_DNA_levelUnrated
maternally imprinted geneUnrated maternally_imprinted_geneUnrated
gene silenced by DNA modificationUnrated gene_silenced_by_DNA_modificationUnrated
integration excision siteUnrated integration_excision_siteUnrated
no sequence alterationUnrated no_sequence_alterationUnrated
group IIA intronUnrated group_IIA_intronUnrated
beta_turn_iilUnrated beta turn left handed type twoUnrated beta_turn_left_handed_type_twoUnrated type II' beta turnUnrated type II' turnUnrated
V VJ J C clusterUnrated V_VJ_J_C_clusterUnrated V-(VJ)-J-C-CLUSTERUnrated
AACCCT boxUnrated AACCCT_boxUnrated
INSDC_feature:J_segmentUnrated J geneUnrated J-GENEUnrated J_gene_segmentUnrated
RNApol III promoter type 1Unrated RNApol_III_promoter_type_1Unrated
immature peptide regionUnrated immature_peptide_regionUnrated
SL2 acceptor siteUnrated SL2_acceptor_siteUnrated
syntenicUnrated
RNAi reagentUnrated RNAi_reagentUnrated
INSDC_qualifier:mitoticUnrated INSDC_qualifier:mitotic_recombinationUnrated mitotic recombination regionUnrated mitotic_recombination_regionUnrated
readUnrated
rearrangement regionUnrated rearrangement_regionUnrated
5-hydroxymethylcytidineUnrated five hydroxymethylcytidineUnrated five_hydroxymethylcytidineUnrated hm5CUnrated
bacterial_RNApol_promoter_sigma_70_elementUnrated bacterial RNA polymerase promoter sigma 70Unrated
gene with polycistronic transcriptUnrated gene_with_polycistronic_transcriptUnrated
edited transcriptUnrated edited_transcriptUnrated
TFBS ablationUnrated TFBS_ablationUnrated transcription factor binding site ablationUnrated VEP:TFBS_ablationUnrated
transitionUnrated
W-regionUnrated W_regionUnrated
splice_regionUnrated
silent mutationUnrated silent_mutationUnrated
inversion cum translocationUnrated inversion_cum_translocationUnrated
common_fragile_siteUnrated
lncRNA primary transcriptUnrated lncRNA_primary_transcriptUnrated
INSDC_qualifier:polyA_signal_sequenceUnrated polyadenylation termination signalUnrated poly(A) signalUnrated polyA signal sequenceUnrated polyA_signal_sequenceUnrated
H4K4me3Unrated H4K4 trimethylation siteUnrated H4K4_trimethylation_siteUnrated
cosmidUnrated cosmid vectorUnrated
inversion breakpointUnrated inversion_breakpointUnrated
H3K79 di-methylation siteUnrated H3K79_dimethylation_siteUnrated
downstream transcript variantUnrated downstream_transcript_variantUnrated
chromosomal variation attributeUnrated chromosomal_variation_attributeUnrated
fosmidUnrated
plasmidUnrated plasmid sequenceUnrated
H2A.ZK15acUnrated H2AZK15acUnrated H2AZK15 acetylation siteUnrated H2AZK15_acetylation_siteUnrated
directional motif v5Unrated DMv5Unrated DMv5 motifUnrated DMv5_motifUnrated
interior exonUnrated interior_exonUnrated
restriction enzyme cleavage junctionUnrated restriction_enzyme_cleavage_junctionUnrated
protein-codingUnrated protein_codingUnrated
polypeptide repeatUnrated polypeptide_repeatUnrated
androgen response elementUnrated androgen_response_elementUnrated AREUnrated
histidine tRNA primary transcriptUnrated histidine_tRNA_primary_transcriptUnrated
TFBS amplification Unrated TFBS_amplificationUnrated transcription factor binding site amplificationUnrated VEP:TFBS_amplificationUnrated
protein coding geneUnrated protein_coding_geneUnrated
strand attributeUnrated strand_attributeUnrated
frame restoring variantUnrated frame_restoring_variantUnrated
GATA boxUnrated GATA_boxUnrated
mobile element deletionUnrated mobile_element_deletionUnrated
intrachromosomal transpositionUnrated intrachromosomal_transpositionUnrated
capped primary transcriptUnrated capped_primary_transcriptUnrated
increased polyadenylation variantUnrated increased_polyadenylation_variantUnrated
no outputUnrated no_outputUnrated
downstream_intergenic_fusionUnrated
VDJ C clusterUnrated VDJ_C_clusterUnrated (VDJ)-C-CLUSTERUnrated
snRNA U6atacUnrated U6atac small nuclear RNAUnrated U6atac snRNAUnrated U6atac_snRNAUnrated
IG_C_geneUnrated IGC_geneUnrated immunoglobulin_C_geneUnrated Immunoglobulin_Constant_germline_GeneUnrated
cryptic splice siteUnrated cryptic_splice_siteUnrated
DTB transposonUnrated piggyBac TIR transposonUnrated piggyBac_TIR_transposonUnrated PiggyBac transposable elementUnrated
non_synonymousUnrated
external transcribed spacer regionUnrated external_transcribed_spacer_regionUnrated
maternal uniparental disomyUnrated maternal_uniparental_disomyUnrated
INSDC_qualifier:unprocessedUnrated unprocessed pseudogenic rRNAUnrated unprocessed_pseudogenic_rRNAUnrated
tyrosine kinase retrotransposonUnrated YR retrotransposonUnrated YR_retrotransposonUnrated
molecular_contact_regionUnrated
sequence length variantUnrated sequence_length_variantUnrated
RNA aptamerUnrated RNA_aptamerUnrated
non_coding_transcript_splice_region_variantUnrated
5-(carboxyhydroxymethyl)uridineUnrated chm5UUnrated five carboxyhydroxymethyl uridineUnrated five_carboxyhydroxymethyl_uridineUnrated
rRNA cleavage snoRNA primary transcriptUnrated rRNA_cleavage_snoRNA_primary_transcriptUnrated
R long terminal repeat regionUnrated R LTR regionUnrated R_LTR_regionUnrated
structural alterationUnrated structural_alterationUnrated
transcript attributeUnrated transcript_attributeUnrated
E box motifUnrated E_box_motifUnrated generic E box motifUnrated
miRNA loopUnrated miRNA_loopUnrated
H3K9 methylation siteUnrated H3K9_methylation_siteUnrated
gene silenced by histone methylationUnrated gene_silenced_by_histone_methylationUnrated
tandemUnrated
16S rRNA geneUnrated 16S_rRNA_geneUnrated cytosolic_rRNA_16S_geneUnrated
biochemical motifUnrated biochemical region of peptideUnrated biochemical_region_of_peptideUnrated
UTR intronUnrated UTR_intronUnrated
three_prime_coding_exon_coding_regionUnrated three prime exon coding regionUnrated
alternatively spliced transcriptUnrated alternatively_spliced_transcriptUnrated
c_terminal_regionUnrated
R 5' long term repeat regionUnrated R five prime LTR regionUnrated R_five_prime_LTR_regionUnrated
Jannovar:regulatory_region_variantUnrated regulatory_region_Unrated regulatory region variantUnrated regulatory_region_variantUnrated snpEff:REGULATIONUnrated VEP:regulatory_region_variantUnrated
np_bindUnrated nucleotide binding siteUnrated nucleotide_binding_siteUnrated
phenylalanyl-transfer ribonucleic acidUnrated phenylalanyl-transfer RNAUnrated phenylalanyl tRNAUnrated phenylalanyl_tRNAUnrated
INSDC_feature:sig_peptideUnrated signal_peptide_region_of_CDSUnrated Signal peptide region of CDSUnrated
protein matchUnrated protein_matchUnrated
H3K27 methylation siteUnrated H3K27_methylation_siteUnrated
asx_turn_iirUnrated asx turn right handed type twoUnrated asx_turn_right_handed_type_twoUnrated
modified L methionineUnrated modified L-methionineUnrated modified_L_methionineUnrated ModMetUnrated
rescue fragmentUnrated rescue regionUnrated rescue_regionUnrated

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