Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
SL11 acceptor siteUnrated SL11_acceptor_siteUnrated
valyl-transfer ribonucleic acidUnrated valyl tRNAUnrated valyl_tRNAUnrated
tmRNA primary transcriptUnrated tmRNA_primary_transcriptUnrated
Forward strandUnrated Top strandUnrated Watson strandUnrated Watson_strandUnrated
INSDC_feature:sig_peptideUnrated signal peptideUnrated signal_peptideUnrated signal peptide coding sequenceUnrated
morpholinoUnrated morpholino oligoUnrated morpholino_oligoUnrated
modified_cytosineUnrated
assortment_derived_variationUnrated
cointegrated plasmidUnrated cointegrated_plasmidUnrated cointegrated repliconUnrated
polypeptide_sequencing_informationUnrated sequencing_informationUnrated
3' long terminal repeat componentUnrated three prime LTR componentUnrated three_prime_LTR_componentUnrated
DDB boxUnrated DDB-boxUnrated DDB_boxUnrated
VDJ geneUnrated V-D-J-GENEUnrated VDJ_gene_segmentUnrated
rRNA primary transcript regionUnrated rRNA_primary_transcript_regionUnrated
ac4CmUnrated N4-acetyl-2'-O-methylcytidineUnrated N4 acetyl 2 prime O methylcytidineUnrated N4_acetyl_2_prime_O_methylcytidineUnrated
hydrophobic_regionUnrated hydrophobic_region_of_peptideUnrated
aspartic acid tRNA primary transcriptUnrated aspartic_acid_tRNA_primary_transcriptUnrated
three prime sticky end restriction enzyme cleavage siteUnrated three_prime_sticky_end_restriction_enzyme_cleavage_siteUnrated
coding variant qualityUnrated coding_variant_qualityUnrated
positively autoregulatedUnrated positively_autoregulatedUnrated
membrane peptide loopUnrated membrane_peptide_loopUnrated
cds-indelUnrated inframe variantUnrated inframe_variantUnrated VAAST:inframe_variantUnrated
transposable element geneUnrated transposable_element_geneUnrated
cytosolic ribosomal RNAUnrated cytosolic rRNAUnrated cytosolic_rRNAUnrated
operon memberUnrated operon_memberUnrated
miRtronUnrated
invalidated by genomic contaminationUnrated invalidated_by_genomic_contaminationUnrated
insertion siteUnrated insertion_siteUnrated
SP6 RNA Polymerase PromoterUnrated SP6_RNA_Polymerase_PromoterUnrated
H3K79 methylation siteUnrated H3K79_methylation_siteUnrated
histone methylationUnrated histone methylation siteUnrated histone_methylation_siteUnrated
bipartite duplicationUnrated bipartite_duplicationUnrated
attCtn siteUnrated attCtn_siteUnrated
cytosolic small subunit rRNAUnrated cytosolic SSU ribosomal RNAUnrated cytosolic SSU rRNAUnrated cytosolic_SSU_rRNAUnrated
simple operonUnrated simple_operonUnrated
free chromosome armUnrated free_chromosome_armUnrated
5-mCUnrated 5 methylcytosineUnrated 5_methylcytosineUnrated m5cUnrated m-5CUnrated
terminal-repeat retrotransposons in miniatureUnrated terminal-repeat_retrotransposons_in_miniatureUnrated TRIMUnrated
INSDC_feature:prim_transcriptUnrated primary transcriptUnrated primary_transcriptUnrated
gene segmentUnrated gene_segmentUnrated
signal anchorUnrated signal_anchorUnrated uncleaved signal peptideUnrated
lipoprotein signal peptideUnrated lipoprotein_signal_peptideUnrated prokaryotic membrane lipoprotein lipid attachment siteUnrated
5' long terminal repeatUnrated 5' LTRUnrated five prime LTRUnrated five_prime_LTRUnrated
coding exonUnrated coding_exonUnrated
uninverted insertional duplicationUnrated uninverted_insertional_duplicationUnrated
7-cyano-7-deazaguanosineUnrated preQ0Unrated seven cyano seven deazaguanosineUnrated seven_cyano_seven_deazaguanosineUnrated
sequence length alterationUnrated sequence_length_alterationUnrated
OHyW*Unrated undermodified hydroxywybutosineUnrated undermodified_hydroxywybutosineUnrated
altered gene product levelUnrated altered_gene_product_levelUnrated altered transcription levelUnrated altered_transcription_levelUnrated
3' ESTUnrated three prime ESTUnrated three_prime_ESTUnrated
INSDC_qualifier:tandemUnrated tandem repeatUnrated tandem_repeatUnrated
CAAT boxUnrated CAAT-boxUnrated CAAT signalUnrated CAAT_signalUnrated INSDC_qualifier:CAAT_signalUnrated
terminal inverted repeat elementUnrated terminal_inverted_repeat_elementUnrated TIR elementUnrated
transcript bound by proteinUnrated transcript_bound_by_proteinUnrated
engineeredUnrated
IRLinv siteUnrated IRLinv_siteUnrated
5 prime UTR exon variantUnrated 5_prime_UTR_exon_variantUnrated
intrachromosomal breakpointUnrated intrachromosomal_breakpointUnrated
CDS Extension 5 primeUnrated CDS Extension five primeUnrated CDS_five_prime_extensionUnrated elongated CDS five primeUnrated elongated_CDS_five_primeUnrated
DArT markerUnrated DArT_markerUnrated
modified L tryptophanUnrated modified L-tryptophanUnrated modified_L_tryptophanUnrated ModTrpUnrated
spliced leader RNAUnrated spliced_leader_RNAUnrated
bidirectional gene fusionUnrated bidirectional_gene_fusionUnrated
transcription variantUnrated transcription_variantUnrated
inversion site partUnrated inversion_site_partUnrated
seven deazaguanosineUnrated seven_deazaguanosineUnrated
experimental_featureUnrated experimental output artefactUnrated experimental_output_artefactUnrated
transposable element flanking regionUnrated transposable_element_flanking_regionUnrated
gene with edited transcriptUnrated gene_with_edited_transcriptUnrated
H2BK15acUnrated H2BK15 acetylation siteUnrated H2BK15_acetylation_siteUnrated
beta bulgeUnrated beta_bulgeUnrated
5_prime_UTR_premature_start_codon_variantUnrated 5' UTR premature start codon variantUnrated
resolution siteUnrated resolution_siteUnrated res siteUnrated
SL1 acceptor siteUnrated SL1_acceptor_siteUnrated
assortment-derived deficiencyUnrated assortment_derived_deficiencyUnrated
H_ACA_box_scaRNA_geneUnrated H/ACA scaRNA geneUnrated
supercontigUnrated
box C/D snoRNAUnrated C D box snoRNAUnrated C/D box snoRNAUnrated C_D_box_snoRNAUnrated SNORDUnrated
NDM2Unrated NDM2 motifUnrated NDM2_motifUnrated non directional promoter motif 2Unrated
pyrrolysine tRNA primary transcriptUnrated pyrrolysine_tRNA_primary_transcriptUnrated
D DJ clusterUnrated D_DJ_clusterUnrated D-(DJ)-CLUSTERUnrated
INSDC_qualifier:otherUnrated recombination featureUnrated recombination_featureUnrated
500B downstream variantUnrated 500B_downstream_variantUnrated near-gene-3Unrated
transcribed spacer regionUnrated transcribed_spacer_regionUnrated
five prime open reading frameUnrated five_prime_open_reading_frameUnrated
random sequenceUnrated random_sequenceUnrated
short tandem repeat contractionUnrated short_tandem_repeat_contractionUnrated str contractionUnrated
assortment derived duplicationUnrated assortment_derived_duplicationUnrated
INSDC_qualifier:unitaryUnrated unitary pseudogenic tRNAUnrated unitary_pseudogenic_tRNAUnrated
5-carbamoylmethyluridineUnrated five carbamoylmethyluridineUnrated five_carbamoylmethyluridineUnrated ncm5UUnrated
beta_strandUnrated
nucleotide matchUnrated nucleotide_matchUnrated
restriction fragmentUnrated restriction_fragmentUnrated
DCE_SIUnrated
assembly componentUnrated assembly_componentUnrated
population specific variantUnrated population_specific_variantUnrated
insertion artifactUnrated insertion_artifactUnrated
frameshift unidirectional gene fusionUnrated frameshift_unidirectional_gene_fusionUnrated
7SK RNAUnrated RNA 7SKUnrated RNA_7SKUnrated
T_cell_receptor_geneUnrated TR_geneUnrated

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