Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
polypeptide partial loss of functionUnrated polypeptide_partial_loss_of_functionUnrated
Jockey LINE retrotransposonUnrated Jockey_LINE_retrotransposonUnrated LINE Jockey elementUnrated RIJ retrotransposonUnrated
RNA motifUnrated RNA_motifUnrated
splicing regulatory regionUnrated splicing_regulatory_regionUnrated
origin of vegetative replicationUnrated oriVUnrated
isoleucine tRNA primary transcriptUnrated isoleucine_tRNA_primary_transcriptUnrated
transcribed fragmentUnrated transcribed_fragmentUnrated
DIRS retrotransposonUnrated DIRS YR retrotransposonUnrated DIRS_YR_retrotransposonUnrated RYD retrotransposonUnrated
methionyl-transfer ribonucleic acidUnrated methionyl-transfer RNAUnrated methionyl tRNAUnrated methionyl_tRNAUnrated
deletion-insertionUnrated delinsUnrated indelUnrated
positive sense ssRNA viral sequenceUnrated positive_sense_ssRNA_viral_sequenceUnrated
INSDC_feature:intronUnrated intronUnrated
G to C transversionUnrated G_to_C_transversionUnrated
U12-dependent intronUnrated U12 intronUnrated U12_intronUnrated
mature miRNA variantUnrated mature_miRNA_variantUnrated snpEff:MICRO_RNAUnrated VEP:mature_miRNA_variantUnrated within_mature_miRNAUnrated
polymorphic sequence variantUnrated polymorphic_sequence_variantUnrated
directional motif v2Unrated DMv2Unrated DMv2 motifUnrated DMv2_motifUnrated promoter motif 8Unrated
1,2'-O-dimethylguanosineUnrated m1GmUnrated one two prime O dimethylguanosineUnrated one_two_prime_O_dimethylguanosineUnrated
H3K14acUnrated H3K14 acetylation siteUnrated H3K14_acetylation_siteUnrated
trans-spliced mRNAUnrated trans_spliced_mRNAUnrated
(S)-glycerol nucleic acidUnrated (S)-glycol nucleic acidUnrated S GNA oligoUnrated S_GNA_oligoUnrated
beta turn type six a twoUnrated beta_turn_type_six_a_twoUnrated type VIa2 beta turnUnrated type VIa2 turnUnrated
cysteinyl-transfer ribonucleic acidUnrated cysteinyl-transfer RNAUnrated cysteinyl tRNAUnrated cysteinyl_tRNAUnrated
classic gamma turnUnrated gamma turn classicUnrated gamma_turn_classicUnrated
helix turn helixUnrated helix-turn-helixUnrated helix_turn_helixUnrated
mitochondrial geneUnrated mt geneUnrated mt_geneUnrated
translationally regulatedUnrated translationally_regulatedUnrated
trans-splice junctionUnrated trans_splice_junctionUnrated
enhancerRNAUnrated eRNAUnrated
recombinationally rearrangedUnrated recombinationally_rearrangedUnrated
3 prime UTR exon variantUnrated 3_prime_UTR_exon_variantUnrated
YACUnrated yeast artificial chromosomeUnrated
DNA damage response elementUnrated DREUnrated
CDEIIUnrated centromere DNA Element IIUnrated centromere_DNA_Element_IIUnrated
repeat unitUnrated repeat_unitUnrated
asymmetric RNA internal loopUnrated asymmetric_RNA_internal_loopUnrated
mRNA attributeUnrated mRNA_attributeUnrated
H3acUnrated histone 3 acetylation siteUnrated histone_3_acetylation_siteUnrated
H4K5acUnrated H4K5 acetylation siteUnrated H4K5_acetylation_siteUnrated
MNVUnrated multiple nucleotide substitutionUnrated multiple nucleotide variantUnrated
5PRIME_UTRUnrated 5_prime_UTR_variantUnrated 5'UTR variantUnrated five prime UTR variantUnrated Jannovar:5_prime_utr_variantUnrated Seattleseq:5-prime-UTRUnrated snpEff:UTR_5_PRIMEUnrated untranslated-5Unrated VAAST:5_prime_UTR_variantUnrated VAAST:five_prime_UTR_variantUnrated VEP:5_prime_UTR_variantUnrated
nested tandem repeatUnrated nested_tandem_repeatUnrated NTRUnrated
elongated polypeptideUnrated elongated_polypeptideUnrated
piRNA geneUnrated piRNA_geneUnrated
INSDC_feature:3'UTRUnrated three prime untranslated regionUnrated three prime UTRUnrated three_prime_UTRUnrated
promoter trap constructUnrated promoter_trap_constructUnrated
disabled ORFUnrated disabled_reading_frameUnrated dORFUnrated
genic 3 prime transcript variantUnrated genic 3' transcript variantUnrated genic downstream transcript variantUnrated genic_downstream_transcript_variantUnrated
chloroplast chromosomeUnrated chloroplast_chromosomeUnrated
partial genomic sequence assemblyUnrated partial_genomic_sequence_assemblyUnrated sequence assembly with N-gapsUnrated
low complexity regionUnrated low_complexity_regionUnrated
2-methylthio-N6-hydroxynorvalyl carbamoyladenosineUnrated ms2hn6AUnrated two methylthio N6 hydroxynorvalyl carbamoyladenosineUnrated two_methylthio_N6_hydroxynorvalyl_carbamoyladenosineUnrated
dicistronic transcriptUnrated dicistronic_transcriptUnrated
H3K36 tri-methylation siteUnrated H3K36_trimethylation_siteUnrated
paralogUnrated paralogous regionUnrated paralogous_regionUnrated paralogueUnrated
rinucleotide repeat microsatelliteUnrated trinucleotide repeat microsatellite featureUnrated trinucleotide_repeat_microsatellite_featureUnrated trinucleotide repeat microsatellite locusUnrated
H2BK120acUnrated H2BK120 acetylation siteUnrated H2BK120_acetylation_siteUnrated
U5 3' long terminal repeat regionUnrated U5 three prime LTR regionUnrated U5_three_prime_LTR_regionUnrated
engineered foreign geneUnrated engineered_foreign_geneUnrated
cappedUnrated
insertionUnrated nucleotide insertionUnrated nucleotide_insertionUnrated
polypeptide_metal_contactUnrated
2'-O-methylcytidineUnrated CmUnrated two prime O methylcytidineUnrated two_prime_O_methylcytidineUnrated
polymer attributeUnrated polymer_attributeUnrated
dicistronic mRNAUnrated dicistronic_mRNAUnrated
beta bulge loop sixUnrated beta_bulge_loop_sixUnrated
editedUnrated
CAAX boxUnrated CAAX_boxUnrated
INSDC_qualifier:ribozymeUnrated ribozymeUnrated
Telomerase RNA componentUnrated telomerase RNA geneUnrated telomerase_RNA_geneUnrated TERCUnrated
DNA chromosomeUnrated DNA_chromosomeUnrated
variant originUnrated variant_originUnrated
rare_fragile_siteUnrated
five prime clipUnrated five_prime_clipUnrated
pseudogenic regionUnrated pseudogenic_regionUnrated
non AUG initiated uORFUnrated non_AUG_initiated_uORFUnrated
antisense lncRNA geneUnrated antisense_lncRNA_geneUnrated
Jannovar:splice_acceptor_variantUnrated Seattleseq:splice-acceptorUnrated snpEff:SPLICE_SITE_ACCEPTORUnrated splice acceptor variantUnrated splice_acceptor_variantUnrated VAAST:splice_acceptor_variantUnrated VEP:splice_acceptor_variantUnrated
orthologousUnrated
scRNA geneUnrated scRNA_geneUnrated
TFRS moduleUnrated TFRS_moduleUnrated TFRS phraseUnrated transcription factor regulatory site moduleUnrated transcription factor regulatory site phraseUnrated
INSDC_qualifier:otherUnrated repeat regionUnrated repeat_regionUnrated
5.8S rRNA geneUnrated 5_8S rRNA geneUnrated 5_8S_rRNA_geneUnrated cytosolic_rRNA_5_8S_geneUnrated
chromosome armUnrated chromosome_armUnrated
ref miRNAUnrated ref_miRNAUnrated RefSeq miRNAUnrated RefSeq-miRNAUnrated
distal_promoter_elementUnrated
D DJ J clusterUnrated D_DJ_J_clusterUnrated D-(DJ)-J-CLUSTERUnrated
d(GTT)Unrated GTT_trinucleotide_repeatUnrated
5-taurinomethyl-2-thiouridineUnrated five taurinomethyl two thiouridineUnrated five_taurinomethyl_two_thiouridineUnrated tm5s2UUnrated
CDEIUnrated centromere_DNA_Element_IUnrated Centromere DNA Element IUnrated
miR encoding shRNA primary transcriptUnrated miR_encoding_shRNA_primary_transcriptUnrated
5_prime_UTR_uORF_stop_codon_loss_variantUnrated uSTOP_lostUnrated
H3K79 mono-methylation siteUnrated H3K79_monomethylation_siteUnrated
high identity regionUnrated high_identity_regionUnrated
translated_nonprocessed_pseudogeneUnrated translated unprocessed pseudogeneUnrated translated_unprocessed_pseudogeneUnrated
three prime coding exonUnrated three_prime_coding_exonUnrated
RNAUnrated
bound by nucleic acidUnrated bound_by_nucleic_acidUnrated
orthologUnrated orthologous regionUnrated orthologous_regionUnrated orthologueUnrated
coding transcript variantUnrated coding_transcript_variantUnrated Jannovar:coding_transcript_variantUnrated

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