Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
SVA_insertionUnrated
experimental_feature_attributeUnrated
non contiguous finishedUnrated noncontiguous_finishedUnrated
INSDC_qualifier:locus_control_regionUnrated LCRUnrated locus control regionUnrated locus_control_regionUnrated
INSDC_qualifier:lncRNAUnrated lncRNAUnrated lncRNA_transcriptUnrated long non-coding RNAUnrated
7SK RNA geneUnrated RNA 7SK geneUnrated RNA_7SK_geneUnrated
INSDC_qualifier:ribosome_binding_siteUnrated ribosome entry siteUnrated ribosome_entry_siteUnrated
encodes disjoint polypeptidesUnrated encodes_disjoint_polypeptidesUnrated
BACUnrated bacterial artificial chromosomeUnrated
TrpUnrated tryptophanUnrated WUnrated
NLSUnrated nuclear_localization_signalUnrated
free ring duplicationUnrated free_ring_duplicationUnrated
IUnrated IleUnrated isoleucineUnrated
SHP boxUnrated SHP_boxUnrated
SUnrated SerUnrated serineUnrated
INSDC_feature:oriTUnrated origin of transferUnrated oriTUnrated
m62AUnrated N6,N6-dimethyladenosineUnrated N6_N6_dimethyladenosineUnrated
laevosynaptic chromosomeUnrated laevosynaptic_chromosomeUnrated
recursive splice siteUnrated recursive_splice_siteUnrated
INSDC_qualifier:silencerUnrated silencerUnrated
cellular mislocalizationUnrated cellular mislocalization variantUnrated cellular_mislocalization_variantUnrated defective subcellular localizationUnrated
matchUnrated
increased gene product levelUnrated increased_gene_product_levelUnrated increased transcription levelUnrated increased_transcription_levelUnrated
RST retrotransposonUnrated tRNA SINE elementUnrated tRNA SINE retrotransposonUnrated tRNA_SINE_retrotransposonUnrated
H3K27 tri-methylation siteUnrated H3K27_trimethylation_siteUnrated
B-boxUnrated B_boxUnrated
minus 1 frameshiftUnrated minus_1_frameshiftUnrated
cytosolic 16S ribosomal RNAUnrated cytosolic_16S_rRNAUnrated cytosolic 16S SSU RNAUnrated cytosolic rRNA 16SUnrated
7-methylguanineUnrated seven methylguanineUnrated seven_methylguanineUnrated
2KB_downstream_variantUnrated Seattleseq:near-gene-3Unrated
encodes 1 polypeptideUnrated encodes_1_polypeptideUnrated
circular double stranded RNA chromosomeUnrated circular_double_stranded_RNA_chromosomeUnrated
pedigree specific variantUnrated pedigree_specific_variantUnrated
conserved intron variantUnrated conserved_intron_variantUnrated Jannovar:conserved_intron_variantUnrated snpEff:INTRON_CONSERVEDUnrated
n_terminal_regionUnrated
wybutosineUnrated yWUnrated
modified RNA base featureUnrated modified_RNA_base_featureUnrated
germline variantUnrated germline_variantUnrated
nuclear mitochondrial pseudogeneUnrated nuclear mt pseudogeneUnrated nuclear_mt_pseudogeneUnrated NUMTUnrated
spliceosomal intron regionUnrated spliceosomal_intron_regionUnrated
V D DJ J C clusterUnrated V_D_DJ_J_C_clusterUnrated V-D-(DJ)-J-C-CLUSTERUnrated
distal duplicationUnrated distal_duplicationUnrated
recombination enhancerUnrated recombination_enhancerUnrated
amino acid substitutionUnrated amino_acid_substitutionUnrated VAAST:amino_acid_substitutionUnrated
beta turn type six aUnrated beta_turn_type_six_aUnrated type VIa beta turnUnrated type VIa turnUnrated
proviral regionUnrated proviral_regionUnrated
group 1 intron homing endonuclease target regionUnrated group_1_intron_homing_endonuclease_target_regionUnrated
gene fusionUnrated gene_fusionUnrated
silenced by DNA methylationUnrated silenced_by_DNA_methylationUnrated
Goldstein-Hogness boxUnrated INSDC_qualifier:TATA_boxUnrated TATA boxUnrated TATA_boxUnrated
CDS_supported_by_peptide_spectrum_matchUnrated
deletion artifactUnrated deletion_artifactUnrated
loop-origin miRsUnrated loRUnrated
GlnUnrated glutamineUnrated QUnrated
DNA signatureUnrated signatureUnrated
virtual sequenceUnrated virtual_sequenceUnrated
elongated polypeptide N terminalUnrated elongated_polypeptide_N_terminalUnrated
QUnrated queuosineUnrated
plastid geneUnrated plastid_geneUnrated
plastid sequenceUnrated plastid_sequenceUnrated
INSDC_qualifier:unitaryUnrated unitary pseudogenic rRNAUnrated unitary_pseudogenic_rRNAUnrated
recodedUnrated
A-minor RNA motifUnrated symmetric_RNA_internal_loopUnrated
chromosomal transpositionUnrated chromosomal_transpositionUnrated
ESTUnrated expressed sequence tagUnrated
RNA junction loopUnrated RNA_junction_loopUnrated
validatedUnrated
4.5S snRNA primary transcriptUnrated U14 snoRNA primary transcriptUnrated U14_snoRNA_primary_transcriptUnrated
tryptophan tRNA primary transcriptUnrated tryptophan_tRNA_primary_transcriptUnrated
genomic cloneUnrated genomic_cloneUnrated
circular single stranded DNA chromosomeUnrated circular_single_stranded_DNA_chromosomeUnrated
schellmann loop sixUnrated schellmann_loop_sixUnrated six-residue schellmann loopUnrated
ochre_stop_codonUnrated Ochre stop codonUnrated
bacterial RNApol promoter sigma ecf Unrated bacterial_RNApol_promoter_sigma_ecf_elementUnrated
simple regulonUnrated simple_regulonUnrated
3,2'-O-dimethyluridineUnrated m3UmUnrated three two prime O dimethyluridineUnrated three_two_prime_O_dimethyluridineUnrated
tRNA encodingUnrated tRNA_encodingUnrated
inosineUnrated
Cu_contact_siteUnrated polypeptide copper ion contact siteUnrated polypeptide_copper_ion_contact_siteUnrated
micronuclear chromosomeUnrated micronuclear_chromosomeUnrated
INSDC_feature:transit_peptideUnrated transit peptide region of CDSUnrated transit_peptide_region_of_CDSUnrated
allelic pseudogenic tRNAUnrated allelic_pseudogenic_tRNAUnrated INSDC_feature:tRNAUnrated INSDC_qualifier:allelicUnrated
macronuclear sequenceUnrated macronuclear_sequenceUnrated
gene member regionUnrated gene_member_regionUnrated
decreased_polypeptide_levelUnrated decreased popypeptide levelUnrated reduced protein expressionUnrated reduced protein levelUnrated
activated cryptic splice donorUnrated cryptic splice donorUnrated cryptic_splice_donorUnrated
conjugative transposonUnrated conjugative_transposonUnrated
A minor RNA motifUnrated A_minor_RNA_motifUnrated
engineered tagUnrated engineered_tagUnrated
SL12 acceptor siteUnrated SL12_acceptor_siteUnrated
INSDC_qualifier:scRNAUnrated scRNAUnrated small cytoplasmic RNAUnrated
1-methyladenosineUnrated m1AUnrated one methyladenosineUnrated one_methyladenosineUnrated
attR siteUnrated attR_siteUnrated
restriction_enzyme_assembly_scarUnrated
contig collectionUnrated contig_collectionUnrated
snoRNA geneUnrated snoRNA_geneUnrated
unorientated intrachromosomal transpositionUnrated unoriented_intrachromosomal_transpositionUnrated
V VDJ C clusterUnrated V_VDJ_C_clusterUnrated V-(VDJ)-C-CLUSTERUnrated
leucine tRNA primary transcriptUnrated leucine_tRNA_primary_transcriptUnrated
post translationally regulated geneUnrated post_translationally_regulated_geneUnrated

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