Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
2'-O-methylguanosineUnrated GmUnrated two prime O methylguanosineUnrated two_prime_O_methylguanosineUnrated
T cell receptor Joining pseudogeneUnrated T_cell_receptor_Joining_pseudogeneUnrated T cell receptor J pseudogeneUnrated T_cell_receptor_J_pseudogeneUnrated TR J pseudogeneUnrated TR_J_pseudogeneUnrated
compensatory transcript secondary structure variantUnrated compensatory_transcript_secondary_structure_variantUnrated
duplicated_pseudogeneUnrated
NMD polymorphic pseudogene transcriptUnrated NMD_polymorphic_pseudogene_transcriptUnrated nonsense_mediated_decay_polymorphic_pseudogeneUnrated
polypeptide_turn_motifUnrated
editing variantUnrated editing_variantUnrated
transcriptionally inducedUnrated transcriptionally_inducedUnrated
unidirectional gene fusionUnrated unidirectional_gene_fusionUnrated
heat shock elementUnrated HSEUnrated
H2A.ZK11acUnrated H2AZK11acUnrated H2AZK11 acetylation siteUnrated H2AZK11_acetylation_siteUnrated
R 3' long terminal repeat regionUnrated R three prime LTR regionUnrated R_three_prime_LTR_regionUnrated
directional motif v4Unrated DMv4Unrated DMv4 motifUnrated DMv4_motifUnrated motif 1 elementUnrated promoter motif 1Unrated
gene silenced by RNA interferenceUnrated gene_silenced_by_RNA_interferenceUnrated RNA interference silenced geneUnrated RNAi silenced geneUnrated
polypeptide zinc ion contact siteUnrated polypeptide_zinc_ion_contact_siteUnrated Zn_contact_siteUnrated
3-methylpseudouridineUnrated m3YUnrated three methylpseudouridineUnrated three_methylpseudouridineUnrated
Z1-regionUnrated Z1_regionUnrated
intron_Unrated intronicUnrated intron variantUnrated intron_variantUnrated Jannovar:intron_variantUnrated Seattleseq:intronUnrated snpEff:INTRONUnrated VAAST:intron_variantUnrated VEP:intron_variantUnrated
inversion derived deficiency plus aneuploidUnrated inversion_derived_deficiency_plus_aneuploidUnrated
5-hmCUnrated 5-hydroxymethylcytosineUnrated 5_hydroxymethylcytosineUnrated
A to G transitionUnrated A_to_G_transitionUnrated
morpholino backboneUnrated morpholino_backboneUnrated
linkage groupUnrated linkage_groupUnrated
CDS Extension 3 primeUnrated CDS Extension three primeUnrated CDS_three_prime_extensionUnrated elongated CDS three primeUnrated elongated_CDS_three_primeUnrated
chromosomal translocationUnrated chromosomal_translocationUnrated
FLEX_elementUnrated
stem loop regionUnrated stem_loop_regionUnrated
INSDC_feature:sourceUnrated sequence sourceUnrated sequence_sourceUnrated
extrachromosomal mobile genetic elementUnrated extrachromosomal_mobile_genetic_elementUnrated
Jannovar:non_coding_transcript_variantUnrated nc transcript variantUnrated non coding transcript variantUnrated non_coding_transcript_variantUnrated VEP:non_coding_transcript_variantUnrated within_non_coding_geneUnrated
increased_translational_product_levelUnrated increase translational product levelUnrated
valine tRNA primary transcriptUnrated valine_tRNA_primary_transcriptUnrated
H3K36 di-methylation siteUnrated H3K36_dimethylation_siteUnrated
tiling path cloneUnrated tiling_path_cloneUnrated
essential_splice_siteUnrated splice site variantUnrated splice_site_variantUnrated VAT:spliceOverlapUnrated
1,2'-O-dimethylinosineUnrated m'ImUnrated one two prime O dimethylinosineUnrated one_two_prime_O_dimethylinosineUnrated
negatively autoregulated geneUnrated negatively_autoregulated_geneUnrated
gRNA encodingUnrated gRNA_encodingUnrated
vacuolar sorting signalUnrated vacuolar_sorting_signalUnrated
glycerol nucleic acidUnrated glycol nucleic acidUnrated GNA oligoUnrated GNA_oligoUnrated
INSDC_feature:operonUnrated operonUnrated
mitochondrial_tRNAUnrated mt_tRNAUnrated Mt_tRNAUnrated
m4CmUnrated N4,2'-O-dimethylcytidineUnrated N4 2 prime O dimethylcytidineUnrated N4_2_prime_O_dimethylcytidineUnrated
endonuclease spliced intronUnrated endonuclease_spliced_intronUnrated
loopUnrated loop portion of stem loopUnrated
5-carboxymethylaminomethyl- 2'-O-methyluridineUnrated cmnm5UmUnrated five carboxymethylaminomethyl two prime O methyluridineUnrated five_carboxymethylaminomethyl_two_prime_O_methyluridineUnrated
-35 signalUnrated INSDC_qualifier:minus_35_signalUnrated minus 35 signalUnrated minus_35_signalUnrated
enhancer trap constructUnrated enhancer_trap_constructUnrated
group II intronUnrated group_II_intronUnrated
proplastid sequenceUnrated proplastid_sequenceUnrated
interbandUnrated
clone insert startUnrated clone_insert_startUnrated
splice acceptor variant-NMD escapingUnrated splice_acceptor_variant_NMD_escapingUnrated splice acceptor variant-nonsense-mediated decay escapingUnrated
lariat intronUnrated lariat_intronUnrated
INSDC_feature:mat_peptideUnrated mature protein region of CDSUnrated mature_protein_region_of_CDSUnrated
reciprocalUnrated
paternal variantUnrated paternal_variantUnrated
3'D-HEPTAMERUnrated three prime D heptamerUnrated three_prime_D_heptamerUnrated
glutaminyl-transfer ribonucleic acidUnrated glutaminyl-transfer RNAUnrated glutaminyl tRNAUnrated glutaminyl_tRNAUnrated
2'-O-methylinosineUnrated ImUnrated two prime O methylinosineUnrated two_prime_O_methylinosineUnrated
DHU loopUnrated DHU_loopUnrated
H ACA box snoRNA primary transcriptUnrated H_ACA_box_snoRNA_primary_transcriptUnrated
modified L serineUnrated modified L-serineUnrated modified_L_serineUnrated MosSerUnrated
U5 long terminal repeat regionUnrated U5 LTR regionUnrated U5_LTR_regionUnrated
asx_turn_iilUnrated asx turn left handed type twoUnrated asx_turn_left_handed_type_twoUnrated
recombination_signal_sequenceUnrated
invertedUnrated
nucleomorphic chromosomeUnrated nucleomorphic_chromosomeUnrated
target site duplicationUnrated target_site_duplicationUnrated
1-methylpseudouridineUnrated m1YUnrated one methylpseudouridineUnrated one_methylpseudouridineUnrated
INSDC_qualifier:recoding_stimulatory_regionUnrated recoding stimulatory regionUnrated recoding_stimulatory_regionUnrated recoding stimulatory signalUnrated
-2 frameshift variantUnrated minus 2 frameshift variantUnrated minus_2_frameshift_variantUnrated
18S rRNA geneUnrated 18S_rRNA_geneUnrated cytosolic_rRNA_18S_geneUnrated
stop codonUnrated stop_codonUnrated
exemplarUnrated
1,2'-O-dimethyladenosineUnrated m1AmUnrated one two prime O dimethyladenosineUnrated one_two_prime_O_dimethyladenosineUnrated
IG_variable_geneUnrated IG_V_geneUnrated IGV_geneUnrated Immunoglobulin_variable_geneUnrated
V VDJ J clusterUnrated V_VDJ_J_clusterUnrated
lysine tRNA primary transcriptUnrated lysine_tRNA_primary_transcriptUnrated
dispersed repeatUnrated dispersed_repeatUnrated INSDC_qualifier:dispersedUnrated interspersed repeatUnrated
pseudogene retained intronUnrated pseudogenic_transcript_with_retained_intronUnrated
H3K36 mono-methylation siteUnrated H3K36_monomethylation_siteUnrated
BAC cloned genomic insertUnrated BAC_cloned_genomic_insertUnrated
increased transcript level variantUnrated increased_transcript_level_variantUnrated
serine/threonine turnUnrated serine_threonine_turnUnrated st_turnUnrated
baseUnrated
transcript with translational frameshiftUnrated transcript_with_translational_frameshiftUnrated
protein hmm matchUnrated protein_hmm_matchUnrated
m6AUnrated N6 methyladenosineUnrated N6-methyladenosineUnrated N6_methyladenosineUnrated
five prime UTR intronUnrated five_prime_UTR_intronUnrated
C regionUnrated C_regionUnrated
RR tractUnrated RR_tractUnrated
IMGUnrated wyosineUnrated
selenocysteine tRNA primary transcriptUnrated selenocysteine_tRNA_primary_transcriptUnrated
blunt end restriction enzyme cleavage siteUnrated blunt_end_restriction_enzyme_cleavage_siteUnrated
AUG initiated uORFUnrated AUG_initiated_uORFUnrated
central hydrophobic region of signal peptideUnrated central_hydrophobic_region_of_signal_peptideUnrated
paralogousUnrated
nucleic acidUnrated nucleic_acidUnrated
insertion attributeUnrated insertion_attributeUnrated

Next 100 concepts