Sequence Ontology (SO)

Name: Sequence Ontology (SO)
Published: 2026-11-13T13:52:25.298104Z

Selected English labels and exact synonyms from the Sequence Ontology (SO), release 2026-08-07, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Chloe Harris

Languages shown reflect this page; source translations may cover only some concepts.

English
MicF RNAUnrated MicF_RNAUnrated
foreign geneUnrated foreign_geneUnrated
inert_DNA_spacerUnrated
nuclear_rim_localization_signalUnrated
decayed exonUnrated decayed_exonUnrated
PIP boxUnrated PIP_boxUnrated
inteinUnrated
Jannovar:transcript_ablationUnrated transcript ablationUnrated transcript_ablationUnrated VEP:transcript_ablationUnrated
group IIB intronUnrated group_IIB_intronUnrated
gene with recoded mRNAUnrated gene_with_recoded_mRNAUnrated
5'RSUnrated five prime D recombination signal sequenceUnrated five prime D-recombination signal sequenceUnrated five_prime_D_recombination_signal_sequenceUnrated
catalytic DNAUnrated DNA enzymeUnrated DNAzymeUnrated
metabolic islandUnrated metabolic_islandUnrated
mating type M-boxUnrated mating_type_M_boxUnrated
uncharacterized chromosomal mutationUnrated uncharacterized_chromosomal_mutationUnrated
tmRNA encodingUnrated tmRNA_encodingUnrated
MNPUnrated
designed sequenceUnrated designed_sequenceUnrated
transposable elementUnrated transposable_elementUnrated transposonUnrated
polypyrimidine initiatorUnrated TCT elementUnrated TCT_motifUnrated
5S SINE elementUnrated 5S SINE retrotransposonUnrated 5S_SINE_retrotransposonUnrated RSS retrotransposonUnrated
methylated base featureUnrated methylated_DNA_base_featureUnrated
intron domainUnrated intron_domainUnrated
disease causing variantUnrated disease_causing_variantUnrated
MNV artifactUnrated MNV_artifactUnrated
st_turn_irUnrated st turn right handed type oneUnrated st_turn_right_handed_type_oneUnrated
snoRNA encodingUnrated snoRNA_encodingUnrated
D J clusterUnrated D_J_clusterUnrated D-J-CLUSTERUnrated
3 prime UTR elongationUnrated 3_prime_UTR_elongationUnrated
AU rich elementUnrated AU-rich elementUnrated AU_rich_elementUnrated
extended cis splice siteUnrated extended_cis_splice_siteUnrated
plus 1 frameshiftUnrated plus_1_frameshiftUnrated
chloroplast geneUnrated ct geneUnrated ct_geneUnrated
active peptideUnrated active_peptideUnrated
Y-regionUnrated Y_regionUnrated
gene groupUnrated gene_groupUnrated
lysyl-transfer ribonucleic acidUnrated lysyl-transfer RNAUnrated lysyl tRNAUnrated lysyl_tRNAUnrated
small nucleolar RNA U14Unrated snoRNA U14Unrated U14 small nucleolar RNAUnrated U14 snoRNAUnrated U14_snoRNAUnrated
gene with stop codon read throughUnrated gene_with_stop_codon_read_throughUnrated
INSDC_qualifier:processedUnrated processed pseudogenic tRNAUnrated processed_pseudogenic_tRNAUnrated
RNApol II core promoterUnrated RNApol_II_core_promoterUnrated
engineered episomeUnrated engineered_episomeUnrated
selenocysteinyl-transfer ribonucleic acidUnrated selenocysteinyl-transfer RNAUnrated selenocysteinyl tRNAUnrated selenocysteinyl_tRNAUnrated
double stranded oligonucleotideUnrated ds oligoUnrated ds_oligoUnrated ds-oligonucleotideUnrated
outronUnrated
spot-42 RNAUnrated spot_42_RNAUnrated
polycistronic mRNAUnrated polycistronic_mRNAUnrated
invalidated by genomic polyA primed cDNAUnrated invalidated_by_genomic_polyA_primed_cDNAUnrated
m2GmUnrated N2,2'-O-dimethylguanosineUnrated N2 2 prime O dimethylguanosineUnrated N2_2_prime_O_dimethylguanosineUnrated
promoter flanking regionUnrated promoter_flanking_regionUnrated
downstream gene variantUnrated downstream_gene_variantUnrated Jannovar:downstream_gene_variantUnrated snpEff:DOWNSTREAMUnrated VEP:downstream_gene_variantUnrated
cysteine tRNA primary transcriptUnrated cysteine_tRNA_primary_transcriptUnrated
hn6AUnrated N6 hydroxynorvalylcarbamoyladenosineUnrated N6-hydroxynorvalylcarbamoyladenosineUnrated N6_hydroxynorvalylcarbamoyladenosineUnrated
transgenic insertionUnrated transgenic_insertionUnrated
5-caCUnrated 5-carboxycytosineUnrated 5_carboxylcytosineUnrated
flankedUnrated
H3K9 di-methylation siteUnrated H3K9_dimethylation_siteUnrated
CDS fragmentUnrated CDS_fragmentUnrated incomplete CDSUnrated
epoxyqueuosineUnrated eQUnrated
OUnrated PylUnrated pyrrolysineUnrated
variant frequencyUnrated variant_frequencyUnrated
cDNA matchUnrated cDNA_matchUnrated
core promoter elementUnrated core_promoter_elementUnrated
pseudogenic exonUnrated pseudogenic_exonUnrated
intein_encoding_regionUnrated
INSDC_feature:telomereUnrated telomereUnrated telomeric DNAUnrated telomeric sequenceUnrated
gene silenced by histone modificationUnrated gene_silenced_by_histone_modificationUnrated
SL9 acceptor siteUnrated SL9_acceptor_siteUnrated
5' ESTUnrated five prime ESTUnrated five_prime_ESTUnrated
small non-coding RNA geneUnrated sncRNA geneUnrated sncRNA_geneUnrated
INSDC_qualifier:promoterUnrated promoterUnrated promoter sequenceUnrated
polypeptide_regionUnrated
minor TSSUnrated minor_TSSUnrated
m22GmvUnrated N2,N2,2'-O-trimethylguanosineUnrated N2_N2_2_prime_O_trimethylguanosineUnrated
-1 frameshift variantUnrated minus 1 frameshift variantUnrated minus_1_frameshift_variantUnrated
loxP siteUnrated loxP_siteUnrated
plus 2 framshiftUnrated plus_2_framshiftUnrated
circular plasmidUnrated circular_plasmidUnrated
monomeric repeatUnrated monomeric_repeatUnrated
CDS supported by EST or cDNA dataUnrated CDS_supported_by_EST_or_cDNA_dataUnrated
H4K8acUnrated H4K8 acetylation siteUnrated H4K8_acetylation_siteUnrated
ribozyme geneUnrated ribozyme_geneUnrated
amino acid insertionUnrated amino_acid_insertionUnrated
5-(isopentenylaminomethyl)- 2-thiouridineUnrated five isopentenylaminomethyl two thiouridineUnrated five_isopentenylaminomethyl_two_thiouridineUnrated inm5s2UUnrated
hammerhead ribozymeUnrated hammerhead_ribozymeUnrated INSDC_qualifier:hammerhead_ribozymeUnrated
alanyl-transfer ribonucleic acidUnrated alanyl-transfer RNAUnrated alanyl tRNAUnrated alanyl_tRNAUnrated
aneuploidUnrated
restriction_enzyme_regionUnrated
2'-O-methyladenosineUnrated AmUnrated two prime O methyladenosineUnrated two_prime_O_methyladenosineUnrated
Jannovar:missense_variantUnrated missenseUnrated missense codonUnrated missense_variantUnrated Seattleseq:missenseUnrated snpEff:NON_SYNONYMOUS_CODINGUnrated VAAST:missense_variantUnrated VAT:nonsynonymousUnrated VEP:missense_variantUnrated
encodes overlapping peptidesUnrated encodes_overlapping_peptidesUnrated
chromosomally_aberrant_genomeUnrated
assembly_error_correctionUnrated
pi helixUnrated pi_helixUnrated
mating type regionUnrated mating_type_regionUnrated
mobileUnrated
silencedUnrated
decreased transcription rate variantUnrated decreased_transcription_rate_variantUnrated
INSDC_feature:primer_bindUnrated primer binding siteUnrated primer_binding_siteUnrated
low complexityUnrated low_complexityUnrated

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