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Open Ontology Resource Library / ohmi

Host–Microbiome Interactions Ontology (OHMI)

Selected English labels and exact synonyms from the Host–Microbiome Interactions Ontology (OHMI), release 2026-05-14, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Morgan Reed

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English
expansion of Moraxella in gut of COPD patient compared to healthy humanUnrated
depletion of Amycolatopsis sp. in gut of MDD patient compared to healthy humanUnrated
expansion of Bacteroides caccae in gout human gutUnrated
depletion of Nannocystis sp. in gut of MDD patient compared to healthy humanUnrated
expansion of Desulfobulbus in lung of COPD patient compared to healthy humanUnrated
expansion of Lachnoanaerobaculum in gut of MDD patient compared to healthy humanUnrated
expansion of Haemophilus in lung of COPD patient compared to healthy humanUnrated
RA human respiratory airway microbiome interactionUnrated
expansion of Acinetobacter in lung of severe COPD patient compared to mild-moderate COPDUnrated
bacterial change in gut of female MDD patient compared to healthy humanUnrated
expansion of Leptotrichia in colorectal cancer human gutUnrated
depletion of Acidaminococcaceae in lung of COPD patient compared to healthy humanUnrated
expansion of Bacteroides stercoris in gut of MDD patient compared to healthy humanUnrated
expansion of Bifidobacterium longum in gut of MDD patient compared to healthy humanUnrated
expansion of Klebsiella in gut of COPD patient compared to healthy humanUnrated
expansion of Butyrivibrio in lung of COPD patient compared to healthy humanUnrated
depletion of Fusicatenibacter saccharivorans in gut of MDD patient compared to healthy humanUnrated
expansion of Clostridiales in SLE mouse gutUnrated
GOLD Stage 1Unrated
expansion of Acidovorax in colorectal cancer human gutUnrated
expansion of Anoxybacillus in colorectal cancer human gutUnrated
depletion of Prevotella in diarrheal patient gutUnrated
expansion of Phocaeicola vulgatus in gut of MDD patient compared to healthy humanUnrated
depletion of Weissella in gut of MDD patient compared to healthy humanUnrated
expansion of Actinomycetota in gut of MDD patient compared to healthy humanUnrated
depletion of Veillonella in lung of exacerbation COPD patient compared to stable COPDUnrated
expansion of Eubacteriaceae in lung of COPD patient compared to healthy humanUnrated
expansion of Streptococcus in lung of COPD patient compared to healthy humanUnrated
expansion of Leptotrichiaceae in lung of COPD patient compared to healthy humanUnrated
expansion of Fenollaria timonensis in gut of MDD patient compared to healthy humanUnrated
expansion of Flavonifractor plautii ATCC29863 in gut of MDD patient compared to healthy humanUnrated
expansion of Eggerthella in RA human gutUnrated
expansion of Flavonifractor in gut of MDD patient compared to healthy humanUnrated
depletion of Bacteroidetes in lung of severe COPD patient compared to mild-moderate COPDUnrated
depletion of Blautia obeum in gut of MDD patient compared to healthy humanUnrated
expansion of Microbacterium in colorectal cancer human gutUnrated
expansion of Alistipes in gut of MDD patient compared to healthy humanUnrated
depletion of Hungatella in gut of adolescent MDD patient compared to healthy humanUnrated
depletion of Streptococcus sanguinis in SLE human oral cavityUnrated
depletion of Faecalibacterium prausnitzii in gout human gutUnrated
depletion of Lachnospiraceae in gut of active-phase MDD patient compared to healthy humanUnrated
depletion of Moraxella in lung of severe COPD patient compared to mild-moderate COPDUnrated
relative species abundanceUnrated
expansion of Pseudomonadales in gut of MDD patient compared to healthy humanUnrated
expansion of Streptococcaceae in gut of MDD patient compared to healthy humanUnrated
bacterial change in sputum of exacerbation COPD patient compared to stable COPDUnrated
expansion of Bacteroidales in colorectal cancer human gutUnrated
depletion of Alistipes in gout human gutUnrated
expansion of Abiotrophia in lung of COPD patient compared to healthy humanUnrated
depletion of Coprococcus catus in gout human gutUnrated
expansion of Prevotella in ERA human gutUnrated
expansion of Gordonibacter in gut of female MDD patient compared to healthy humanUnrated
expansion of E. coli NC101 in colorectal cancer human gutUnrated
expansion of Escherichia coli EPEC 32/73 in gout human gutUnrated
expansion of Diutina rugosa in PsA human gutUnrated
expansion of Enterobacteriaceae in gut of COPD patient compared to healthy humanUnrated
human gut microbiome interaction in Crohn's diseaseUnrated
expansion of Fusobacteriaceae in lung of COPD patient compared to healthy humanUnrated
depletion of B. finegoldii in colorectal cancer human gutUnrated
depletion of Sutterella in gut of active-phase MDD patient compared to healthy humanUnrated
expansion of Atopobium in gut of female MDD patient compared to healthy humanUnrated
expansion of P. stomatis in colorectal cancer human gutUnrated
expansion of Crenothrix in colorectal cancer human gutUnrated
'depletion of Bacteroides in colorectal cancer human gut'Unrated
expansion of Bilophila wadsworthia in gut of MDD patient compared to healthy humanUnrated
expansion of Proteus mirabilis in RA human urineUnrated
gout human-gut microbiome interactionUnrated
expansion of Bifidobacterium in gut of MDD patient compared to healthy humanUnrated
depletion of Faecalibacterium in gut of MDD patient compared to healthy humanUnrated
microbiome in human cutaneous systemUnrated
fungal microbiome of lungUnrated
expansion of Desulfobulbaceae in lung of severe COPD patient compared to mild-moderate COPDUnrated
expansion of Bacteroides sp in gout human gutUnrated
depletion of Odoribacter in gout human gutUnrated
expansion of Anaerolineales in gout human gutUnrated
expansion of Yersinia in ERA human gutUnrated
expansion of C. Portiera in colorectal cancer human gutUnrated
expansion of Lachnospiraceae bacterium in RA human gutUnrated
expansion of B.obeum in colorectal cancer human gutUnrated
expansion of Bifidobacterium breve in gut of MDD patient compared to healthy humanUnrated
depletion of Actynomyces in RA human respiratory airwayUnrated
depletion of Aggregatibacter in lung of exacerbation COPD patient compared to stable COPDUnrated
expansion of Enterococcaceae in colorectal cancer human gutUnrated
expansion of Peptostreptococcusi in colorectal cancer human gutUnrated
depletion of Bacteroidaceae bacterium in gut of MDD patient compared to healthy humanUnrated
expansion of Parabacteroides in colorectal cancer human gutUnrated
increased organism quantity compared with healthy controlUnrated
expansion of F. nucleatum subsp. vincentii in colorectal cancer human gutUnrated
expansion of C. hiranonis in colorectal cancer human gutUnrated
RA human oral cavity microbiome interactionUnrated
decreased organism quantity in acute disease patient compared with chronic disease controlUnrated
expansion of F. nucleatum subsp. animalis in colorectal cancer human gutUnrated
expansion of Odoribacter in colorectal cancer human gutUnrated
expansion of Lactobacillus murinus in arthritis rat gutUnrated
expansion of Klebsiella pneumoniae in AS human oral cavityUnrated
human-stomach microbiome interactionUnrated
restoring human gut microbiome resistance to C. difficile infection by fecal microbiota transplantationUnrated
depletion of Shigella in colorectal cancer human gutUnrated
COPD stableUnrated
depletion of Bacteroides in gut of active-phase MDD patient compared to healthy humanUnrated
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