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Open Ontology Resource Library / ohmi

Host–Microbiome Interactions Ontology (OHMI)

Selected English labels and exact synonyms from the Host–Microbiome Interactions Ontology (OHMI), release 2026-05-14, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Morgan Reed

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English
expansion of Selenomonadales in gout human gutUnrated
expansion of Barnesiella intestinihominis in gut of female MDD patient compared to healthy humanUnrated
expansion of S. dysenteriae in colorectal cancer human gutUnrated
patientUnrated
expansion of Alistipes onderdonkii in gut of female MDD patient compared to healthy humanUnrated
expansion of Haemophilus parainfluenzae in lung of COPD patient compared to healthy humanUnrated
depletion of Klebsiella in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
depletion of Bacteroides in RA human gutUnrated
expansion of Aeromonadaceae in lung of severe COPD patient compared to mild-moderate COPDUnrated
expansion of A. muciniphila in colorectal cancer human gutUnrated
depletion of Akkermansia in PsA human gutUnrated
expansion of Fusobacteria in gut of female MDD patient compared to healthy humanUnrated
depletion of Malassezia restricta in PsA human skinUnrated
depletion of M. hypermegale in colorectal cancer human gutUnrated
expansion of Bacteroides ovatus in gut of MDD patient compared to healthy humanUnrated
expansion of Klebsiella pneumoniae in AS human gutUnrated
depletion of Phocaeicola coprocola in gut of MDD patient compared to healthy humanUnrated
expansion of Bacteroides fragilis in arthritis rat gutUnrated
depletion of Butyricicoccus in gut of MDD patient compared to healthy humanUnrated
depletion of Ruminococcus in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
depletion of Planctomycetes in gut of MDD patient compared to healthy humanUnrated
expansion of Eggerthella in gut of female MDD patient compared to healthy humanUnrated
expansion of Bacteroides thetaiotaomicron in gut of MDD patient compared to healthy humanUnrated
expansion of Shigella in colorectal cancer human gutUnrated
interaction between microbiome and host immune systemUnrated
depletion of Cardiobacterium in RA human oral cavityUnrated
depletion of Faecalibacterium in gut of adolescent MDD patient compared to healthy humanUnrated
expansion of Filifactor in colorectal cancer human gutUnrated
expansion of Lawsonibacter in gut of adolescent MDD patient compared to healthy humanUnrated
expansion of Basidiomycota in colorectal cancer human gutUnrated
expansion of Campylobacteriaceae in lung of COPD patient compared to healthy humanUnrated
SCFA-producing bacteriaUnrated
depletion of Bacteroidetes in lung of COPD patient compared to healthy humanUnrated
'depletion of L. reuteri in colorectal cancer human gut'Unrated
expansion of Veillonellaceae in gut of MDD patient compared to healthy humanUnrated
expansion of Bifidobacterium dentium in RA human gutUnrated
expansion of Peptostreptococcus in gut of MDD patient compared to healthy humanUnrated
depletion of Ruminococcaceae in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
depletion of Clostridiales in SLE human gutUnrated
GOLD Stage 4Unrated
expansion of Mogibacterium in colorectal cancer human gutUnrated
depletion of Prevotella in lung of severe COPD patient compared to mild-moderate COPDUnrated
mouse gut microbiome interactionUnrated
expansion of Fusobacteriaceae in gut of active-phase MDD patient compared to healthy humanUnrated
microbiome-immune-cancer interactionUnrated
depletion of Megamonas funiformis in gut of MDD patient compared to healthy humanUnrated
depletion of Coprobacillus in PsA human gutUnrated
expansion of Tannerellaceae in gut of MDD patient compared to healthy humanUnrated
colon cancer human-gut microbiome interactionUnrated
disease exacerbationUnrated
depletion of Bacteroidales in colorectal cancer human gutUnrated
depletion of Thauera in gut of MDD patient compared to healthy humanUnrated
expansion of Burkholderiaceae in gut of female MDD patient compared to healthy humanUnrated
expansion of Bifidobacterium adolescentis ATCC 15703 in gut of MDD patient compared to healthy humanUnrated
expansion of Coriobacterium in gut of MDD patient compared to healthy humanUnrated
expansion of Bacteroidaceae in gut of COPD patient compared to healthy humanUnrated
expansion of Clostridiaceae in colorectal cancer human gutUnrated
depletion of Gemella in gut of COPD patient compared to healthy humanUnrated
expansion of C. adipataccumulans in colorectal cancer human gutUnrated
depletion of Porphyromonas in RA human gut compared to fibromyalgia patientsUnrated
mouse-microbiome interactionUnrated
host microbiome restoration by DMARDUnrated
depletion of Pseudobutyrivibrio in PsA human gutUnrated
depletion of Bacteroidia in lung of exacerbation COPD patient compared to stable COPDUnrated
depletion of Nakamurellaceae in lung of COPD patient compared to healthy humanUnrated
descreased microbiome organism diversityUnrated
differentially enriched microbial marker for diseaseUnrated
expansion of Bacteroidaceae in AS human gutUnrated
depletion of Salmonella enterica subsp. enterica in colorectal cancer human gutUnrated
expansion of Phascolarctobacterium in gut of active-phase MDD patient compared to healthy humanUnrated
expansion of Flavobacteriaceae in gut of MDD patient compared to healthy humanUnrated
depletion of Fusobacterium sp. in gut of MDD patient compared to healthy humanUnrated
depletion of Actinobacteria <phylum> in PsA human skinUnrated
depletion of Treponema in RA human respiratory airwayUnrated
expansion of Bilophila in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
expansion of S. gallolyticus in colorectal cancer human gutUnrated
expansion of Prevotella in SLE human gutUnrated
depletion of Bifidobacterium in colorectal cancer human gutUnrated
expansion of Megasphaera elsdenii DSM20460 in gut of MDD patient compared to healthy humanUnrated
expansion of Porphyromonas macacae in AS human gutUnrated
depletion of Lachnospira in gut of MDD patient compared to healthy humanUnrated
expansion of Salmonella in reactive arthritis rat gutUnrated
expansion of Treponema in SLE human oral cavityUnrated
expansion of Campylobacteraceae in gut of female MDD patient compared to healthy humanUnrated
expansion of Tannerellaceae in gut of female MDD patient compared to healthy humanUnrated
Bacteroides depletion in arthritis mouse gutUnrated
expansion of Alistipes in gut of female MDD patient compared to healthy humanUnrated
expansion of Campylobacteriales in lung of COPD patient compared to healthy humanUnrated
expansion of P. micra in colorectal cancer human gutUnrated
depletion of Solobacterium in gut of adolescent MDD patient compared to healthy humanUnrated
expansion of Streptococcus in PsA human skinUnrated
bacterial change in sputum of COPD patient compared to healthy humanUnrated
expansion of Clostridia in colorectal cancer human gutUnrated
expansion of Parasporobacterium in gout human gutUnrated
depletion of B. uniformis in colorectal cancer human gutUnrated
depletion of B. animalis in colorectal cancer human gutUnrated
depletion of Enterocloster clostridioformis in gut of MDD patient compared to healthy humanUnrated
disease stableUnrated
expansion of Solobacterium sp. S4-A19 in colorectal cancer human gutUnrated
depletion of Veillonella in RA human gutUnrated
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