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Open Ontology Resource Library / ohmi

Selected OHMI: Ontology of Host-Microbiome Interactions Terms — English (OHMI)

Selected terminology labels for OHMI: Ontology of Host-Microbiome Interactions. Original publisher/project: OHMI: Ontology of Host-Microbiome Interactions; credited creators: Barry Smith; Alexander Alekseyenko; Anna Maria Masci; Haihe Wang; Jianmin Wu; Jie Zheng; Jihad Obeid; Kaiyong Liu; Yang (Rena) Wang; Yang Wang (Rena); Yingtong Liu; Yongqun "Oliver" He (YH); Yu Hong. Original source: https://purl.obolibrary.org/obo/ohmi.owl; actual download: https://raw.githubusercontent.com/OHMI-ontology/OHMI/master/ohmi.owl; official project record: https://obofoundry.org/ontology/ohmi.html. Retrieved 2026-11-07. Version: http://purl.obolibrary.org/obo/ohmi/releases/2026-05-14/ohmi.owl; 2026-05-14. Original artifact SHA-256: f7c809d9dba32784fd22b8449418b82e2ac5dff7e89bdc67aacfb10df66c3706. Original and public license: CC-BY-4.0; license evidence is embedded in that exact artifact: http://creativecommons.org/licenses/by/4.0/. Source IDs and individual source citations are preserved. Languages: English; explicit tags are retained; untagged English labels are inferred from the OLS language index, with this inference retained in private source notes. No nationality, jurisdiction or cross-language equivalence is inferred. Only active own-project owl:Class primary labels and explicit exact synonyms are included. Deprecated classes, general alternative labels, external namespaces, definitions, relationships and imports are excluded. This is a selected subset, not the complete ontology. Semantic review is ongoing; the resource library does not claim project authorization or endorsement.

Curator: Morgan Reed

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English
bacterial change in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
expansion of Staphylococcus aureus in lung of COPD patient compared to healthy humanUnrated
depletion of Prevotella in RA human gut compared to fibromyalgia patientsUnrated
expansion of Desulfobacterales in lung of severe COPD patient compared to mild-moderate COPDUnrated
expansion of Escherichia in gut of MDD patient compared to healthy humanUnrated
expansion of Solobacterium in lung of COPD patient compared to healthy humanUnrated
depletion of Bacteroides fragilis in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
expansion of Ruminococcaceae in AS human gutUnrated
expansion of Paenibacillaceae in gut of MDD patient compared to healthy humanUnrated
expansion of Olsenella in lung of COPD patient compared to healthy humanUnrated
depletion of Photobacterium in gout human gutUnrated
host microbiome restoration by treatmentUnrated
depletion of Prevotella in lung of exacerbation COPD patient compared to stable COPDUnrated
depletion of Pseudobutyrivibrio in gut of MDD patient compared to healthy humanUnrated
expansion of Pontibacillus in lung of severe COPD patient compared to mild-moderate COPDUnrated
depletion of Lachnospiraceae in gut of MDD patient compared to healthy humanUnrated
expansion of Lachnospiraceae in lung of COPD patient compared to healthy humanUnrated
expansion of Prevotella copri in RA human gutUnrated
expansion of Parabacteroides in gut of female MDD patient compared to healthy humanUnrated
depletion of Haemophilus spp. in RA human oral cavityUnrated
depletion of Streptococcus rubneri in gut of MDD patient compared to healthy humanUnrated
segregation of Prevotella or Bacteroides dominance in RA human gutUnrated
expansion of Eggerthellaceae in gut of adolescent MDD patient compared to healthy humanUnrated
depletion of Blautia coccoides in RA human gut compared to fibromyalgia patientsUnrated
depletion of B. animalis subsp. lactis in colorectal cancer human gutUnrated
expansion of Yersinia in reactive arthritis rat gutUnrated
expansion of Lactobacillus in lung of COPD patient compared to healthy humanUnrated
depletion of Haemophilus in gut of adolescent MDD patient compared to healthy humanUnrated
expansion of Lentisphaerota in gut of MDD patient compared to healthy humanUnrated
expansion of Atopobium in gut of MDD patient compared to healthy humanUnrated
depletion of Malassezia pachydermatis in PsA human skinUnrated
depletion of Phocaeicola plebeius in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
expansion of Clostridium perfringens in RA human gutUnrated
depletion of Haemophilus in RA human oral cavityUnrated
expansion of Bacteroidetes in SLE human gutUnrated
depletion of Subdoligranulum sp. 60_17 in colorectal cancer human gutUnrated
expansion of Odoribacter in gut of MDD patient compared to healthy humanUnrated
expansion of Prevotella intermedia 17 in gut of MDD patient compared to healthy humanUnrated
expansion of Ruminococcus lactaris in RA human gutUnrated
expansion of Enterobacteriaceae in colorectal cancer human gutUnrated
expansion of Bacteroides fragilis in gut of MDD patient compared to healthy humanUnrated
expansion of Anaerotruncus in gout human gutUnrated
expansion of L. bacterium in colorectal cancer human gutUnrated
expansion of Oxalobacter in gut of MDD patient compared to healthy humanUnrated
expansion of S. equinus in colorectal cancer human gutUnrated
expansion of Porphyromonadaceae in gout human gutUnrated
expansion of F. nucleatum subsp. nucleatum in colorectal cancer human gutUnrated
AS rat-gut microbiome interactionUnrated
expansion of Fusobacterium sp. in colorectal cancer human gutUnrated
expansion of Leptotrichia in lung of COPD patient compared to healthy humanUnrated
expansion of Porphyromonas in colorectal cancer human gutUnrated
depletion of Dialister in gout human gutUnrated
pH valueUnrated
GOLD Stage 2Unrated
depletion of Firmicutes in lung of severe COPD patient compared to mild-moderate COPDUnrated
depletion of Pyramidobacter in gut of active-phase MDD patient compared to healthy humanUnrated
expansion of Flavonifractor in gut of active-phase MDD patient compared to healthy humanUnrated
expansion of e-proteobacteria in lung of COPD patient compared to healthy humanUnrated
expansion of Coriobacteriaceae in colorectal cancer human gutUnrated
expansion of B. wadsworthia in colorectal cancer human gutUnrated
expansion of Oscillibacter in gut of MDD patient compared to healthy humanUnrated
expansion of Bacteroidaceae in gout human gutUnrated
expansion of Streptococcus pyogenes in arthritis rat gutUnrated
expansion of Clostridium sp. cp01.19 in colorectal cancer human gutUnrated
depletion of Prevotellaceae in gut of MDD patient compared to healthy humanUnrated
expansion of Gordonibacter pamelaeae in RA human gutUnrated
depletion of Prevotella copri in ERA human gutUnrated
depletion of Proteobacteria in PsA human skinUnrated
expansion of Veillonellaceae in colorectal cancer human gutUnrated
expansion of Fusobacteria in colorectal cancer human gutUnrated
expansion of Pseudomonas in gut of MDD patient compared to healthy humanUnrated
expansion of Holdemania in gout human gutUnrated
expansion of Desulfovibrionaceae in gut of COPD patient compared to healthy humanUnrated
expansion of Desulfobulbaceae in lung of COPD patient compared to healthy humanUnrated
depletion of Firmicutes in colorectal cancer human gutUnrated
expansion of Prevotella melaninogenica ATCC25845 in gut of MDD patient compared to healthy humanUnrated
depletion of Bacteroidetes in gut of COPD patient compared to healthy humanUnrated
depletion of Bifidobacterium in gut of COPD patient compared to healthy humanUnrated
depletion of Bulleidia in lung of exacerbation COPD patient compared to stable COPDUnrated
expansion of Ruminococcus in gut of MDD patient compared to healthy humanUnrated
depletion of Lachnospiraceae in gut of COPD patient compared to healthy humanUnrated
expansion of C.hylemonae in colorectal cancer human gutUnrated
depletion of Dialister in lung of exacerbation COPD patient compared to stable COPDUnrated
depletion of Coprococcus in PsA human gutUnrated
expansion of Salmonella in colorectal cancer human gutUnrated
expansion of Lactobacillus casei in arthritis rat gutUnrated
depletion of Propionibacterium in gut of COPD patient compared to healthy humanUnrated
expansion of Bifidobacterium sp. in gut of MDD patient compared to healthy humanUnrated
expansion of Aeromonadales in lung of severe COPD patient compared to mild-moderate COPDUnrated
depletion of Haemophilus parainfluenzae in SLE human oral cavityUnrated
expansion of Campylobacter in AS human gutUnrated
depletion of Eikenella in lung of severe COPD patient compared to mild-moderate COPDUnrated
expansion of Odoribacter in gut of active-phase MDD patient compared to remission-phase MDD patientUnrated
expansion of Adlercreutzia in gut of MDD patient compared to healthy humanUnrated
expansion of Clostridia in RA human gutUnrated
host microbiome restorationUnrated
depletion of Haemophilus spp. in RA human gutUnrated
depletion of Citrobacter in colorectal cancer human gutUnrated
expansion of Kingella in lung of COPD patient compared to healthy humanUnrated
expansion of Proteobacteria in lung of COPD patient compared to healthy humanUnrated
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