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Open Ontology Resource Library / obib

Ontology for Biobanking (OBIB)

Selected English labels and exact synonyms from the Ontology for Biobanking (OBIB), release 2023-04-05, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Morgan Reed

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Languages shown reflect this page; source translations may cover only some concepts.

English
left hemicolectomyUnrated
proctocolectomyUnrated
flash frozen specimenUnrated
tissue specimen suitability for molecular analysisUnrated
no recurrence of tumorUnrated
comment from clinical data entry formUnrated
research authorization documentation for post mortem specimen donation that is negativeUnrated
adding specimen into a containerUnrated
agreement to a specified research addendumUnrated
authorization for postmortem specimen donation for transplantation purposes onlyUnrated
patient registry dataUnrated
preoperative intravenous administration of opioid analgesicUnrated
presence of sarcomatoid features on specimen slideUnrated
comments related to research authorization processUnrated
clinical history of unexplained seizuresUnrated
clinical history of idiopathic heart diseaseUnrated
smoking end dateUnrated
estrogen with progestin hormone replacement therapyUnrated
biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifierUnrated
activity related to a particular specimen donor was stopped.Unrated
clinical history of Multiple SclerosisUnrated
fixed tissue block specimenUnrated
FFPE dehydration process durationUnrated
SOP adjustmentUnrated
abdominoperineal resectionUnrated
microdissected specimenUnrated
tobacco materialUnrated
clinical history of clotting disordersUnrated
specimen gross appearance of tumorUnrated
gross diagnosis of resected tissueUnrated
measurement of time between FFPE tissue processor cycle completion and embeddingUnrated
buffered formalin conditionUnrated
transverse colectomyUnrated
rectosigmoidectomyUnrated
conical centrifuge tube identifierUnrated
collection packet with specimen and information materialUnrated
top priority tumor specimen was obtained and processed with a particular FFPE fixation delay protocolUnrated
time of blood plasma specimen transfer to freezerUnrated
specimen gross appearance of tumor centerUnrated
date of form data verificationUnrated
postal address of biobank contact personUnrated
PAXgene DNA vacutainerUnrated
FFPE tissue section H&E deparaffinization protocolUnrated
identification number of a protocol at a particular siteUnrated
omics experiment on specimenUnrated
FFPE clearing agent roleUnrated
biobank location ISO 3166-1 alpha-2 codeUnrated
clinical history of West Nile Virus exposureUnrated
clinical history of unexplained weight lossUnrated
percentage of viable tumor slide specimen by surface areaUnrated
sample collection identifierUnrated
authorization for postmortem specimen donation for transplantation and researchUnrated
FFPE freezing by LN2 vapor phase protocolUnrated
trash containerUnrated
research authorization for post mortem specimen donation not obtained because legally authorized representative felt too distraughtUnrated
date and time FFPE tissue embedding startedUnrated
activity related to a particular specimen donor was stopped because not enough tissueUnrated
fixed tissue specimenUnrated
uncharged glass slide indicatorUnrated
date of research protocol expiration as determined by an institutional review boardUnrated
second temperature recorded in operating room of specimen donorUnrated
date of hormonal therapy prior to surgeryUnrated
left radical nephrectomyUnrated
explanation of why tumor tissue specimen was not released to a biobankUnrated
research authorization for post mortem specimen donation not obtained because legally authorized representative felt pressuredUnrated
Location below resectionUnrated
administration of inhalation anaestheticUnrated
specimen donor clinical data entry was completedUnrated
percentage of necrotic tumor slide specimen by surface areaUnrated
comment on FFPE tissue processingUnrated
fresh paraffinUnrated
FFPE tissue section H&E staining in oven durationUnrated
specimen was processed in accordance with the specified SOPUnrated
data and time parent specimen ID was recordedUnrated
name of person in gross room receiving OR specimenUnrated
clinical history of gonorrheaUnrated
comment on the use of hormonally based birth controlUnrated
time of surgical ligature for specimen collectionUnrated
PAXgene RNA vacutainerUnrated
clinical history of lupusUnrated
fresh buffered formalin conditionUnrated
vital sign blood pressure variance early in organ excisionUnrated
smoking start dateUnrated
sample collection data entryUnrated
start date of sampling for biobankUnrated
age of paraffinUnrated
study proper nameUnrated
open surgical methodUnrated
clinical history of sexually transmitted diseaseUnrated
tumor specimen satisfied criteria of necrosis percentage and tumor contentUnrated
clinical history of smallpox vaccinationUnrated
timing of scoring performance statusUnrated
date of data updateUnrated
limitations on research authorization for use of donated specimensUnrated
post adjuvant performance status scoreUnrated
total time FFPE freshly poured blocks were cooledUnrated
date of immunotherapy prior to surgeryUnrated
administration of insulin during surgeryUnrated
current reformed smoker for less than 15 years historyUnrated
subtotal colectomyUnrated
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