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Open Ontology Resource Library / obib

Ontology for Biobanking (OBIB)

Selected English labels and exact synonyms from the Ontology for Biobanking (OBIB), release 2023-04-05, with source identifiers and spelling preserved. Licensed CC BY 4.0; full attribution is listed under Sources. Under semantic review; not endorsed by the ontology's maintainers.

Curator: Morgan Reed

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Languages shown reflect this page; source translations may cover only some concepts.

English
mixed state specimen datumUnrated
time of blood cell pellet transfer to storageUnrated
right partial nephrectomyUnrated
blood specimen volume in conical centrifuge tubeUnrated
specimen donor intraoperative blood loss prior to organ excision volume measurement datumUnrated
comment from pathology review of FFPE slideUnrated
clinical history of high unexplained feverUnrated
specimen shipment received in good conditionUnrated
settlement part of address biobank contactUnrated
sigmoid colectomyUnrated
postal code for sample collection or study contactUnrated
medical recordUnrated
vital sign blood pressure variance late in organ excisionUnrated
comment on paraffin embedding of FFPE tissueUnrated
sample handlingUnrated
clinical history of cellulitisUnrated
left salpingo-oophorectomyUnrated
colorectal cancer risk factorUnrated
FFPE tissue section H&E clearing protocolUnrated
preoperative intravenous administration of antiemeticUnrated
low anterior resectionUnrated
hysterectomy with bilateral salpingo-oophorectomyUnrated
clinical history of cancer within a time period before deathUnrated
collecting specimen from organism during organ donationUnrated
indication of intravenous drug useUnrated
clinical history of blood transfusion in foreign countryUnrated
human subject recuiter roleUnrated
water bath maintenance frequencyUnrated
clinical history of sclerodermaUnrated
tumor tissue was released to the biobankUnrated
post-office box numberUnrated
postal code of biobank contactUnrated
clinical history of an unexplained cough or shortness of breathUnrated
authorization documentation for postmortem specimen donation for a specified purposeUnrated
time in formalin measurementUnrated
right salpingo-oophorectomyUnrated
data and time specimen was frozen in liquid nitrogenUnrated
frozen tissue block specimenUnrated
biobank contact personUnrated
activity related to a particular specimen donor was stopped because tissue was not released to a biobankUnrated
date of research authorization verificationUnrated
activity related to a particular specimen donor was stopped because tissue was too necroticUnrated
department of sample collection or study contactUnrated
comment on deviations from H&E equipment maintenance SOPUnrated
human biobankUnrated
research authorization for post mortem specimen donation not obtained because legally authorized representative was afraid the decision might affect the surgery plans of donorUnrated
departmentUnrated
name of hosted study collectionUnrated
PAXgene fixation reagentUnrated
duration time of smoking regularlyUnrated
settlement part of addressUnrated
vacutainer specimen barcodeUnrated
number of sampled human study participants objectiveUnrated
sample collection data updateUnrated
time of blood processingUnrated
vaginal surgical methodUnrated
specimen collection quality review commentUnrated
specimen transport SOPUnrated
email address of biobank contact personUnrated
comment on procurement site restrictionUnrated
specimen was processed in accordance with the FFPE SOP including <1 hour delay to fixation and 23 hour time in fixativeUnrated
time of specimen placement on dry ice for transportUnrated
proctectomyUnrated
time of specimen transportUnrated
end date of sampling for biobankUnrated
clinical history of unexplained weakness and fatigueUnrated
specimen surgical removalUnrated
name of submitter of pathology case summary report.Unrated
clinical history of Human Immunodeficiency VirusUnrated
pathologist submitted specimen procurement feedbackUnrated
biobank's unique resource locatorUnrated
discardingUnrated
nicotine patchUnrated
name of biobank person receiving specimenUnrated
clinical history of Severe Acute Respiratory SyndromeUnrated
H&E staining equipment maintenance performed and recorded frequency value specificationUnrated
research authorization documentation for post mortem specimen donation that is affirmativeUnrated
date of surgical removal of specimenUnrated
authorization not obtained for whole brain donationUnrated
date and time FFPE tissue cassette removed from processorUnrated
ending time of parent specimen dissection.Unrated
current non-drinker of alcoholUnrated
research authorization for post mortem specimen donation not obtained because legally authorized representative needed more time to make a decisionUnrated
date of review of pathology case summary reportUnrated
administration of regional anaestheticUnrated
minimum number of aliquots not bankedUnrated
end of sampling specimens for biobankUnrated
blood spottingUnrated
indicator of whether specimen donor has reached the age of majorityUnrated
clinical history of Hepatitis BUnrated
specimen slide IDUnrated
presence of gross hemolysis of plasma observedUnrated
description of glass slide chargeUnrated
left oophorectomyUnrated
clinical history of Amyotrophic Lateral SclerosisUnrated
obesity colorectal cancer risk factorUnrated
first blood draw dateUnrated
percentage of non-cellular component of tumor slide specimen by surface areaUnrated
contactingUnrated
greatest tumor dimension on slideUnrated
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