Selected Ontology for BIoBanking (OBIB) Terms — English (OBIB)

Selected terminology labels for Ontology for BIoBanking (OBIB). Original publisher/project: Ontology for BIoBanking (OBIB); credited creators: Alice Nzinga; Chris Stoeckert; Jan-Eric Litton; Jie Zheng; Loreana Norlin; Maria Anderberg; Martin N. Fransson; Mathias Brochhausen; Mikael Eriksson; Roxana Merino-Martinez; Sanela Kjellqvist; William R. Hogan. Original source: https://purl.obolibrary.org/obo/obib.owl; actual download: https://raw.githubusercontent.com/biobanking/biobanking/v2023-04-05/obib.owl; official project record: https://obofoundry.org/ontology/obib.html. Retrieved 2026-11-07. Version: http://purl.obolibrary.org/obo/obib/2023-04-05/obib.owl; 2023-04-05. Original artifact SHA-256: 596d0be49bf485b06919ec898381eea21715d7c584dd41fb26f6828927f21616. Original and public license: CC-BY-4.0; license evidence is embedded in that exact artifact: http://creativecommons.org/licenses/by/4.0/. Source IDs and individual source citations are preserved. Languages: English; explicit tags are retained; untagged English labels are inferred from the OLS language index, with this inference retained in private source notes. No nationality, jurisdiction or cross-language equivalence is inferred. Only active own-project owl:Class primary labels and explicit exact synonyms are included. Deprecated classes, general alternative labels, external namespaces, definitions, relationships and imports are excluded. This is a selected subset, not the complete ontology. Semantic review is ongoing; the resource library does not claim project authorization or endorsement.

Curator: Morgan Reed

Languages shown reflect this page; source translations may cover only some concepts.

English
medical product expiration dateUnrated
standard operating procedureUnrated
carbon dioxide level of specimen donor recorded at time closest to organ excisionUnrated
data and time of biobank receipt of specimenUnrated
adherence of stage and replicate numbers to FFPE tissue processing SOPUnrated
name of performer of gross evaluation of resected tissue specimenUnrated
preoperative intravenous administration of medicationUnrated
pelvic exenterationUnrated
time of specimen freezing at -70 to -80 degrees CUnrated
preoperative performance status scoreUnrated
specimen weightUnrated
percentage of gross area of necrosis of a specimen sent to biobankUnrated
specimen was processed in accordance with the FFPE SOPUnrated
manager of human research protocol requirements roleUnrated
date of receiving specimen transportUnrated
testosterone hormone replacement therapyUnrated
vacutainerUnrated
date of submission of pathology case summary reportUnrated
operating room technicianUnrated
date and time FFPE tissue processor cycle endedUnrated
clinical history of Alzheimer's diseaseUnrated
date of chemotherapy prior to surgeryUnrated
specimen receiving organizationUnrated
specimen receivingUnrated
clinical history of a prolonged feverUnrated
amount of packed red blood cells administered intraoperativelyUnrated
right radical nephrectomyUnrated
local pathology review was consistent with site of tissue procurement diagnostic pathology reportUnrated
indicator of ascites fluid collection during surgeryUnrated
injection-based hormonal birth control methodUnrated
FFPE tissue section H&E staining and mounting SOPUnrated
follow-up on donor outcome comment from tissue procurementUnrated
comment on deviations from microtome daily maintenance SOPUnrated
blood not received in biobankUnrated
date of specimen transportUnrated
specimen was collected and stored in accordance with the specified SOPUnrated
clinical history of unexplained lymphadenopathyUnrated
comment on preparation of FFPE tissue sectionUnrated
specimen meeting specificationUnrated
average daily use of cigarette datumUnrated
presence of a tumor larger than a specified size exclusion criterionUnrated
lifelong non-smoker historyUnrated
left partial nephrectomyUnrated
time specimen place in stabilizerUnrated
count of current total human study participantUnrated
negative serological assay resultUnrated
data confirm questionnaireUnrated
rectal temperature measurement assayUnrated
clinical history of rheumatoid arthritisUnrated
minimum amount of required pre-op blood not drawnUnrated
ISO 3166-1 alpha-2 code for biobank contact personUnrated
clinical history of fungal infectionsUnrated
frozen tissue slide specimenUnrated
indicator of collected and banked pre-operative blood specimensUnrated
daily microtome maintenanceUnrated
minimum required pre-operative blood tubes collectedUnrated
local pathology review of QC FFPE tumor tissue H&E slide was completedUnrated
left nephroureterectomyUnrated
unique resource locatorUnrated
age interval informationUnrated
clinical history of abnormal white blood cell levelsUnrated
storage temperature settingUnrated
moderate alcohol consumption historyUnrated
FFPE tissue processing SOPUnrated
filled data confirm questionnaireUnrated
medication materialUnrated
quality control study designUnrated
collection packet component IDUnrated
clinical history of animal tissue xenotransplantUnrated
research authorization for post mortem specimen donation not obtained because legally authorized representative was uncomfortable with the risksUnrated
comment from blood specimen storageUnrated
sample collection or study contact roleUnrated
clinical history of sarcoidosisUnrated
FFPE clearing agent temperatureUnrated
comment on donor pre-operative bowel preparation prior to surgeryUnrated
wedge resection of right lungUnrated
intra-settlement specification part of address of sample collection or study contactUnrated
date and time FFPE tissue was preservedUnrated
manual FFPE tissue section H&E clearingUnrated
telephone number of biobank contactUnrated
hosting biobankUnrated
adherence of paraffin temperature to FFPE tissue processing SOPUnrated
human brain biobankUnrated
preoperative intravenous administration of sedativeUnrated
minimum required pre-operative RNA and DNA PAXgene tubes were collectedUnrated
specimen donor body refrigerated indicatorUnrated
specimen donor intraoperative blood loss at end of surgery volume measurement datumUnrated
familial adenomatous polyposis colorectal cancer risk factorUnrated
date and time FFPE tissue cassette placed in fixativeUnrated
cessation of brain activity deathUnrated
willingness to be contacted for a research studyUnrated
clinical history of sepsisUnrated
clinical history of West Nile VirusUnrated
clinical history of ascitesUnrated
patient questionnaireUnrated
start of sampling specimens for biobankUnrated
neutral buffered formalinUnrated
clinical history of open woundsUnrated
specimen shipment received in poor conditionUnrated
fixative product manufacturerUnrated

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